RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZNF587Q96SQ5 575 aaPredicted RBP16.87■□□□□ 0.29
CLN3-260ENST00000637578 EPYCQ99645 322 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 LINC00470Q9BZP3 86 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 SLC7A8Q9UHI5 535 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 RCE1Q9Y256 329 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 CORINQ9Y5Q5 1042 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 CPSF4LA6NMK7 179 aaKnown RBP16.86■□□□□ 0.29
CLN3-260ENST00000637578 ACOT8O14734 319 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 LYPD3O95274 346 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 SOD3P08294 240 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 ZNF43P17038 809 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 PTAFRP25105 342 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 GTF2E2P29084 291 aaKnown RBP16.86■□□□□ 0.29
CLN3-260ENST00000637578 RIPPLY3P57055 190 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 PGGHGQ32M88 737 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 ENTPD8Q5MY95 495 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 C9orf135Q5VTT2 229 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 TMEM108Q6UXF1 575 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 NHLRC1Q6VVB1 395 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 LINGO2Q7L985 606 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 SMAP2Q8WU79 429 aaPredicted RBP16.86■□□□□ 0.29
CLN3-260ENST00000637578 CXorf56Q9H5V9 222 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 AMDHD2Q9Y303 409 aa16.86■□□□□ 0.29
CLN3-260ENST00000637578 A0A1W2PR80 420 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 MS4A18H0YCH9 400 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 ABCD4O14678 606 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 CHP2O43745 196 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 THY1P04216 161 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 IFNW1P05000 195 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 CD40P25942 277 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 LGALS3BPQ08380 585 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 TRAP1Q12931 704 aaKnown RBP16.85■□□□□ 0.29
CLN3-260ENST00000637578 MS4A18Q3C1V0 323 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 NIPAL3Q6P499 406 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 KLHL17Q6TDP4 642 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 SCAIQ8N9R8 606 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 ANKK1Q8NFD2 765 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 ADAMTS16Q8TE57 1224 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 PERPQ96FX8 193 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 GRIP2Q9C0E4 1043 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 MGAT4BQ9UQ53 548 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 LAMP3Q9UQV4 416 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 USF3Q68DE3 2245 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 TCRBV5S2A0A599 114 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 RPL36A-HNRNPH2H7BZ11 118 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 UPK3AO75631 287 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 CLDN17P56750 224 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 RPS4XP62701 263 aaKnown RBP16.85■□□□□ 0.29
CLN3-260ENST00000637578 MTX3Q5HYI7 312 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 WDR88Q6ZMY6 472 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 PYURFQ96I23 114 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 MOGAT1Q96PD6 335 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 MMADHCQ9H3L0 296 aaPredicted RBP16.85■□□□□ 0.29
CLN3-260ENST00000637578 CISD1Q9NZ45 108 aaKnown RBP16.85■□□□□ 0.29
CLN3-260ENST00000637578 POMPQ9Y244 141 aa16.85■□□□□ 0.29
CLN3-260ENST00000637578 ZNF587BE7ETH6 402 aa16.84■□□□□ 0.29
CLN3-260ENST00000637578 TRAF3IP2O43734 574 aaPredicted RBP16.84■□□□□ 0.29
CLN3-260ENST00000637578 HPRP00739 348 aa16.84■□□□□ 0.29
CLN3-260ENST00000637578 ZNF83P51522 516 aa16.84■□□□□ 0.29
CLN3-260ENST00000637578 FLOT2Q14254 428 aa16.84■□□□□ 0.29
CLN3-260ENST00000637578 TSEN54Q7Z6J9 526 aaKnown RBP16.84■□□□□ 0.29
CLN3-260ENST00000637578 YTHDF3Q7Z739 585 aaKnown RBP16.84■□□□□ 0.29
CLN3-260ENST00000637578 OR1K1Q8NGR3 316 aa16.84■□□□□ 0.29
CLN3-260ENST00000637578 RNF217Q8TC41 542 aa16.84■□□□□ 0.29
CLN3-260ENST00000637578 BCL2L2Q92843 193 aaPredicted RBP16.84■□□□□ 0.29
CLN3-260ENST00000637578 C18orf12Q96KH6 178 aa16.84■□□□□ 0.29
CLN3-260ENST00000637578 ZNF426Q9BUY5 554 aa16.84■□□□□ 0.29
CLN3-260ENST00000637578 OBP2BQ9NPH6 170 aa16.84■□□□□ 0.29
CLN3-260ENST00000637578 MRPL39Q9NYK5 338 aaKnown RBP16.84■□□□□ 0.29
CLN3-260ENST00000637578 TRAPPC13A5PLN9 417 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 KRT33AO76009 404 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 STAMBPO95630 424 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 MT-ATP6P00846 226 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 CD8AP01732 235 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 SEMG1P04279 462 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 YAP1P46937 504 aaKnown RBP16.83■□□□□ 0.28
CLN3-260ENST00000637578 PRPS1P60891 318 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 PIN1Q13526 163 aaPredicted RBP16.83■□□□□ 0.28
CLN3-260ENST00000637578 DTX2Q86UW9 622 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 TMEM123Q8N131 208 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 MAGEE2Q8TD90 523 aaPredicted RBP16.83■□□□□ 0.28
CLN3-260ENST00000637578 C7orf34Q96L11 122 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 LRGUKQ96M69 825 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 ALKBH3Q96Q83 286 aaPredicted RBP16.83■□□□□ 0.28
CLN3-260ENST00000637578 ASPNQ9BXN1 380 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 MAGED1Q9Y5V3 778 aaPredicted RBP16.83■□□□□ 0.28
CLN3-260ENST00000637578 ZFHX3Q15911 3703 aa16.83■□□□□ 0.28
CLN3-260ENST00000637578 SETD2Q9BYW2 2564 aaPredicted RBP16.83■□□□□ 0.28
CLN3-260ENST00000637578 J3KTA2 159 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 CBLP22681 906 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 PAX7P23759 505 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 CDH11P55287 796 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 TAS2R41P59536 307 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 VLDLRP98155 873 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 C1DQ13901 141 aaKnown RBP16.82■□□□□ 0.28
CLN3-260ENST00000637578 HIKESHIQ53FT3 197 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 UTP4Q969X6 686 aaKnown RBP16.82■□□□□ 0.28
CLN3-260ENST00000637578 MPP4Q96JB8 637 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 PRRC1Q96M27 445 aa16.82■□□□□ 0.28
CLN3-260ENST00000637578 OR2M2Q96R28 347 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms