RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ZNF433Q8N7K0 673 aaPredicted RBP9.63□□□□□ -0.87
CUX1-221ENST00000622516 LINC00469Q8N7U9 141 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 POMGNT2Q8NAT1 580 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 ADAD1Q96M93 576 aaKnown RBP9.63□□□□□ -0.87
CUX1-221ENST00000622516 TMEM43Q9BTV4 400 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 ADAM19Q9H013 955 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SLC22A4Q9H015 551 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 A0A0B4J293 547 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 LY6G6EA0A0G2JKS1 128 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 ALG1L2C9J202 215 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 RAD1O60671 282 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 GLCEO94923 617 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 ZFPL1O95159 310 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 HEXBP07686 556 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 ATF1P18846 271 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 RAB3BP20337 219 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SDHAP31040 664 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 UQCRC1P31930 480 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SOX2P48431 317 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 INPP1P49441 399 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 CLDN12P56749 244 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 BIKQ13323 160 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 NKAIN1Q4KMZ8 207 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 LCN1P1Q5VSP4 162 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 FAM199XQ6PEV8 388 aaPredicted RBP9.63□□□□□ -0.87
CUX1-221ENST00000622516 PAMR1Q6UXH9 720 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 PRSS42Q7Z5A4 293 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 PXKQ7Z7A4 578 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 APCDD1LQ8NCL9 501 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 OR6N2Q8NGY6 317 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SETD6Q8TBK2 473 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 ENKURQ8TC29 256 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 DERL3Q96Q80 235 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SOSTQ9BQB4 213 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 NOX4Q9NPH5 578 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 EXOSC3Q9NQT5 275 aaKnown RBP9.63□□□□□ -0.87
CUX1-221ENST00000622516 IKZF2Q9UKS7 526 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 TMA7Q9Y2S6 64 aaKnown RBP9.63□□□□□ -0.87
CUX1-221ENST00000622516 U3KQA8 63 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SUSD5O60279 629 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 AKR7A3O95154 331 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 HLA-DQA2P01906 255 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 PRKCAP17252 672 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 EPHA8P29322 1005 aaPredicted RBP9.62□□□□□ -0.87
CUX1-221ENST00000622516 TAS2R43P59537 309 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 ACTA2P62736 377 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 ACTG2P63267 376 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 ASAH1Q13510 395 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 MELKQ14680 651 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 COL28A1Q2UY09 1125 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 PHF19Q5T6S3 580 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 SLC35D2Q76EJ3 337 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 THEM6Q8WUY1 208 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 ZFP3Q96NJ6 502 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 ABHD1Q96SE0 405 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 AMELYQ99218 206 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 ULBP3Q9BZM4 244 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 BRD7Q9NPI1 651 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 OCIAD1Q9NX40 245 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 MED11Q9P086 117 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 IGHV5-10-1A0A0J9YXX1 117 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 FAM47E-STBD1D6RA91 191 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 GP1BBP13224 206 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 HLA-DOBP13765 273 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 GGTLC2Q14390 218 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 INPP5JQ15735 1006 aaPredicted RBP9.62□□□□□ -0.87
CUX1-221ENST00000622516 LPAL2Q16609 132 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 HES5Q5TA89 166 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 SLC6A19Q695T7 634 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 RHBDD2Q6NTF9 364 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 ADGRG3Q86Y34 549 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 MS4A15Q8N5U1 240 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 YIPF7Q8N8F6 280 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 OR8K3Q8NH51 312 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 AHCTF1Q8WYP5 2266 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 GUCD1Q96NT3 240 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 NKX3-1Q99801 234 aaPredicted RBP9.62□□□□□ -0.87
CUX1-221ENST00000622516 GAREM1Q9H706 876 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 FKRPQ9H9S5 495 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 DCAF16Q9NXF7 216 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 SUSD2Q9UGT4 822 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 NUFIP1Q9UHK0 495 aaKnown RBP9.62□□□□□ -0.87
CUX1-221ENST00000622516 NPFFR2Q9Y5X5 522 aa9.62□□□□□ -0.87
CUX1-221ENST00000622516 KNTC1P50748 2209 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 TMEM265A0A087WTH1 108 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 TMED7-TICAM2A0A0A6YYA0 188 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 PIN1P1O15428 100 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 OGG1O15527 345 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 EEF1E1O43324 174 aaKnown RBP9.61□□□□□ -0.87
CUX1-221ENST00000622516 DCAF7P61962 342 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 CEP78Q5JTW2 689 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 LIPNQ5VXI9 398 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 ARSKQ6UWY0 536 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 KRT74Q7RTS7 529 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 ANKRD37Q7Z713 158 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 SAP25Q8TEE9 199 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 RGP1Q92546 391 aaPredicted RBP9.61□□□□□ -0.87
CUX1-221ENST00000622516 GCDHQ92947 438 aaPredicted RBP9.61□□□□□ -0.87
CUX1-221ENST00000622516 RNF166Q96A37 237 aaPredicted RBP9.61□□□□□ -0.87
CUX1-221ENST00000622516 GFM1Q96RP9 751 aaKnown RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 150.7 ms