RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SRD5A1P18405 259 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 PCMT1P22061 227 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 GIFP27352 417 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 LSP1P33241 339 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 CAPZA2P47755 286 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 RPS23P62266 143 aaKnown RBP10.34□□□□□ -0.75
UPF3B-204ENST00000619445 HOXC5Q00444 222 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 LGALS3BPQ08380 585 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 PUDPQ08623 228 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 RBBP4Q09028 425 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 SCARB2Q14108 478 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 ZNF627Q7L945 461 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 LINGO2Q7L985 606 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 PXKQ7Z7A4 578 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 ARMC8Q8IUR7 673 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 SLC30A8Q8IWU4 369 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 C20orf196Q8IYI0 205 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 TMEM123Q8N131 208 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 KDM8Q8N371 416 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 HPS1Q92902 700 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 DYNLRB1Q9NP97 96 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 MRPL39Q9NYK5 338 aaKnown RBP10.34□□□□□ -0.75
UPF3B-204ENST00000619445 SLC25A37Q9NYZ2 338 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 CCDC167Q9P0B6 97 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 POFUT2Q9Y2G5 429 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 CMAHPQ9Y471 501 aa10.34□□□□□ -0.75
UPF3B-204ENST00000619445 IGHV2OR16-5A0A0B4J2B6 119 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 A0A0B4J2E0 115 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 A0A1B0GX12 115 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 PHF1O43189 567 aaPredicted RBP10.33□□□□□ -0.76
UPF3B-204ENST00000619445 HTR2AP28223 471 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 IDH3AP50213 366 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 CHN2P52757 468 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 PMS2P3Q13401 168 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 DAG1Q14118 895 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 SQLEQ14534 574 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 OR1Q1Q15612 314 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 CARTPTQ16568 116 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 GSG1Q2KHT4 349 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 BEND6Q5SZJ8 279 aaPredicted RBP10.33□□□□□ -0.76
UPF3B-204ENST00000619445 ZNF613Q6PF04 617 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 VHLLQ6RSH7 139 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 FUNDC1Q8IVP5 155 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 C11orf65Q8NCR3 313 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 RNF217Q8TC41 542 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 FOXN4Q96NZ1 517 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 MRGBPQ9NV56 204 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 VAPAQ9P0L0 249 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.33□□□□□ -0.76
UPF3B-204ENST00000619445 TRIM33Q9UPN9 1127 aa10.33□□□□□ -0.76
UPF3B-204ENST00000619445 IGKV1D-42A0A075B6H8 117 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 TRBV5-3A0A0A0MS03 114 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 LY6HO94772 140 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 OR6A2O95222 327 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 DAOP14920 347 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 CALCRP30988 508 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 THBS4P35443 961 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 TUBA1BP68363 451 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 TUBA4AP68366 448 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 HGFACQ04756 655 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 NPRL3Q12980 569 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 TRMT5Q32P41 509 aaKnown RBP10.32□□□□□ -0.76
UPF3B-204ENST00000619445 AGKQ53H12 422 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 ZNF813Q6ZN06 617 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 TUBA1AQ71U36 451 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 SPATA21Q7Z572 469 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 DPPA2Q7Z7J5 298 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 MDP1Q86V88 176 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 PHC2Q8IXK0 858 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 MSRB3Q8IXL7 192 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 ZNF786Q8N393 782 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 C10orf53Q8N6V4 93 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 OR6N1Q8NGY5 312 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 TSPEARQ8WU66 669 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 DYDC1Q8WWB3 177 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 RASSF5Q8WWW0 418 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 MSI2Q96DH6 328 aaKnown RBP10.32□□□□□ -0.76
UPF3B-204ENST00000619445 DOK1Q99704 481 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 PRR14Q9BWN1 585 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 ULBP2Q9BZM5 246 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 MS4A5Q9H3V2 200 aa10.32□□□□□ -0.76
UPF3B-204ENST00000619445 LEF1Q9UJU2 399 aaPredicted RBP10.32□□□□□ -0.76
UPF3B-204ENST00000619445 SLC35F4A4IF30 521 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 MS4A18H0YCH9 400 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 M0R3G1 203 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 CHP2O43745 196 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 SYNGR3O43761 229 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 MGRN1O60291 552 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 UBL3O95164 117 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 STAMBPO95630 424 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 RAB36O95755 333 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 TGFAP01135 160 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 BGLAPP02818 100 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 TACSTD2P09758 323 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 NR4A1P22736 598 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 AQP5P55064 265 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 GALK2Q01415 458 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 SNTB2Q13425 540 aaKnown RBP10.31□□□□□ -0.76
UPF3B-204ENST00000619445 CYP51A1Q16850 503 aa10.31□□□□□ -0.76
UPF3B-204ENST00000619445 MS4A18Q3C1V0 323 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms