RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SF3B5Q9BWJ5 86 aaKnown RBP11.87□□□□□ -0.51
LINC00540-202ENST00000616974 C1QTNF6Q9BXI9 259 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 FKRPQ9H9S5 495 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 RASD1Q9Y272 281 aa11.87□□□□□ -0.51
LINC00540-202ENST00000616974 RAI1Q7Z5J4 1906 aaPredicted RBP11.87□□□□□ -0.51
LINC00540-202ENST00000616974 F8P00451 2351 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 RNF13O43567 381 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 COX5AP20674 150 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 RBM34P42696 430 aaKnown RBP11.86□□□□□ -0.51
LINC00540-202ENST00000616974 MAGEA2P43356 314 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 DNAL1Q4LDG9 190 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 HIKESHIQ53FT3 197 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 THSD4Q6ZMP0 1018 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ASRGL1Q7L266 308 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 NANOGNBQ7Z5D8 188 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ARHGAP24Q8N264 748 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 OR4K5Q8NGD3 323 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ACOT11Q8WXI4 607 aaPredicted RBP11.86□□□□□ -0.51
LINC00540-202ENST00000616974 TMEM45BQ96B21 275 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ASPNQ9BXN1 380 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 SLC19A3Q9BZV2 496 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 NELFAQ9H3P2 528 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 NPAP1Q9NZP6 1156 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ZNF229Q9UJW7 825 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 AURKCQ9UQB9 309 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 A0A1W2PRQ8 180 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 DEFB108AA8MXU0 73 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 GPR171O14626 319 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 SAGP10523 405 aaPredicted RBP11.86□□□□□ -0.51
LINC00540-202ENST00000616974 THRBP10828 461 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 OMPP47874 163 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 BIDP55957 195 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 SORDQ00796 357 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 MYBPC1Q00872 1141 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 PRKCDQ05655 676 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ITGADQ13349 1161 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 C1DQ13901 141 aaKnown RBP11.86□□□□□ -0.51
LINC00540-202ENST00000616974 DGCR6Q14129 220 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 FLOT2Q14254 428 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 C5orf46Q6UWT4 87 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 MBOAT2Q6ZWT7 520 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ZER1Q7Z7L7 766 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 STK32CQ86UX6 486 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 WFDC8Q8IUA0 241 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 UEVLDQ8IX04 471 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 HS3ST5Q8IZT8 346 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 SCAIQ8N9R8 606 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 OR52N5Q8NH56 324 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 SLCO5A1Q9H2Y9 848 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 MCCC2Q9HCC0 563 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ASB6Q9NWX5 421 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ELOVL5Q9NYP7 299 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ADAM18Q9Y3Q7 739 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 CORINQ9Y5Q5 1042 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 LYVE1Q9Y5Y7 322 aa11.86□□□□□ -0.51
LINC00540-202ENST00000616974 ZFHX3Q15911 3703 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 A0A096LPE4 126 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 IGKV1D-43A0A0B4J1Z2 117 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 A0A1W2PPZ6 126 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 MCIDASD6RGH6 385 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 M0R3G1 203 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 CTAG2O75638 210 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 VAMP5O95183 116 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 PLAUP00749 431 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 MT-ATP6P00846 226 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 IGFBP1P08833 259 aaPredicted RBP11.85□□□□□ -0.51
LINC00540-202ENST00000616974 TSPAN19P0C672 248 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 EPXP11678 715 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 PSMB1P20618 241 aaKnown RBP11.85□□□□□ -0.51
LINC00540-202ENST00000616974 LOXP28300 417 aaPredicted RBP11.85□□□□□ -0.51
LINC00540-202ENST00000616974 LIMS1P48059 325 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 RPS4XP62701 263 aaKnown RBP11.85□□□□□ -0.51
LINC00540-202ENST00000616974 SPATS1Q496A3 300 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 OTPQ5XKR4 325 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 KLHL17Q6TDP4 642 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 SLC35D2Q76EJ3 337 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 BHLHA15Q7RTS1 189 aaPredicted RBP11.85□□□□□ -0.51
LINC00540-202ENST00000616974 LRRC75AQ8NAA5 344 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 OR6S1Q8NH40 331 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 POLR2J2Q9GZM3 115 aaKnown RBP11.85□□□□□ -0.51
LINC00540-202ENST00000616974 POLR2J3Q9H1A7 115 aaKnown RBP11.85□□□□□ -0.51
LINC00540-202ENST00000616974 LRMDAQ9H2I8 198 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 FOXD3Q9UJU5 478 aaPredicted RBP11.85□□□□□ -0.51
LINC00540-202ENST00000616974 PRDM4Q9UKN5 801 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 FAM32AQ9Y421 112 aaKnown RBP11.85□□□□□ -0.51
LINC00540-202ENST00000616974 MAGED1Q9Y5V3 778 aaPredicted RBP11.85□□□□□ -0.51
LINC00540-202ENST00000616974 ARFGEF3Q5TH69 2177 aa11.85□□□□□ -0.51
LINC00540-202ENST00000616974 SH3PXD2BA1X283 911 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 H7C1C5 153 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 GADD45GO95257 159 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 LCN6P62502 163 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 TOP3AQ13472 1001 aaPredicted RBP11.84□□□□□ -0.51
LINC00540-202ENST00000616974 SPATA24Q86W54 205 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 SYT14Q8NB59 555 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 ADPRHL1Q8NDY3 354 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 KISS1RQ969F8 398 aaPredicted RBP11.84□□□□□ -0.51
LINC00540-202ENST00000616974 ZNF347Q96SE7 839 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 CRLF2Q9HC73 371 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 A6NNC1 897 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms