RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 WFIKKN1Q96NZ8 548 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 ALPK1Q96QP1 1244 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 OR2M2Q96R28 347 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 CHID1Q9BWS9 393 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 HDHD5Q9BXW7 423 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 UPB1Q9UBR1 384 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 NDRG3Q9UGV2 375 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 TMEM5Q9Y2B1 443 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 HIF3AQ9Y2N7 669 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 LYVE1Q9Y5Y7 322 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 SETXQ7Z333 2677 aaKnown RBP14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 NBPF19A0A087WUL8 3843 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 SH3D21A4FU49 640 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 OR6C65A6NJZ3 312 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 AKAP8O43823 692 aaKnown RBP14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 LYZL6O75951 148 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 IFNGR1P15260 489 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 HOXB6P17509 224 aaKnown RBP14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 OMPP47874 163 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 SLC9A3P48764 834 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 ERFP50548 548 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 LGALS3BPQ08380 585 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 LAPTM4AQ15012 233 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 C22orf34Q6ZV56 151 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 SLC35D2Q76EJ3 337 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 WDFY1Q8IWB7 410 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 ZNF295-AS1Q8N0V1 137 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 TMEM123Q8N131 208 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 OR13C2Q8NGS9 318 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 MOSPD2Q8NHP6 518 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 FAM222BQ8WU58 562 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 KISS1RQ969F8 398 aaPredicted RBP14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 UTP4Q969X6 686 aaKnown RBP14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 DACH2Q96NX9 599 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 EMC6Q9BV81 110 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 OR10A4Q9H209 315 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 CELSR2Q9HCU4 2923 aa14.59□□□□□ -0.07
CCDC28A-202ENST00000611852 TRAV27A0A087WT01 109 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 SLC35F4A4IF30 521 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 SLC43A1O75387 559 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 F13BP05160 661 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 EPXP11678 715 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 DNAJA1P31689 397 aaKnown RBP14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 FOXG1P55316 489 aaPredicted RBP14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 ANKDD1AQ495B1 522 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 OR2T5Q6IEZ7 315 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 OAFQ86UD1 273 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 ZNF433Q8N7K0 673 aaPredicted RBP14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 STEAP2Q8NFT2 490 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 OR2T29Q8NH02 315 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 OR51A7Q8NH64 312 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 S100PBPQ96BU1 408 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 MED18Q9BUE0 208 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 LINC00470Q9BZP3 86 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 ACTR6Q9GZN1 396 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 KRCC1Q9NPI7 259 aaPredicted RBP14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 TAS2R16Q9NYV7 291 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 TMCC3Q9ULS5 477 aa14.58□□□□□ -0.08
CCDC28A-202ENST00000611852 TNFRSF11BO00300 401 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 CLOCKO15516 846 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 KLF4O43474 513 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 UPK3AO75631 287 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 ITGA5P08648 1049 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 PPP3CBP16298 524 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 IL32P24001 234 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 BIDP55957 195 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 ALG10Q5BKT4 473 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 C1orf146Q5VVC0 180 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 BHLHA15Q7RTS1 189 aaPredicted RBP14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 ZER1Q7Z7L7 766 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 PAPD5Q8NDF8 572 aaKnown RBP14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 OR4C15Q8NGM1 316 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 ALKBH3Q96Q83 286 aaPredicted RBP14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 TNFRSF13CQ96RJ3 184 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 GPA33Q99795 319 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 INIPQ9NRY2 104 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 CCM2LQ9NUG4 571 aaPredicted RBP14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 VNN3Q9NY84 501 aa14.57□□□□□ -0.08
CCDC28A-202ENST00000611852 A0A1W2PRG6 482 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 ZNF726A6NNF4 738 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 OR10H3O60404 316 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 FKBP6O75344 327 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 KRT33AO76009 404 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 PRF1P14222 555 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 MPGP29372 298 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 CAMK2DQ13557 499 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 ZBED5Q49AG3 693 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 CARD17Q5XLA6 110 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 LINGO2Q7L985 606 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 ABHD12BQ7Z5M8 362 aaPredicted RBP14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 LRRC75AQ8NAA5 344 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 OR6X1Q8NH79 312 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 SLCO4A1Q96BD0 722 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 C14orf79Q96F83 325 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 LRR1Q96L50 414 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 ADAD1Q96M93 576 aaKnown RBP14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 REEP1Q9H902 201 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 MCCC2Q9HCC0 563 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 U3KQV3 271 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 PRR14LQ5THK1 2151 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms