RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 CCNJQ5T5M9 372 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 GPRC6AQ5T6X5 926 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 TMEM236Q5W0B7 351 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ZDHHC20Q5W0Z9 365 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 OR4F3Q6IEY1 312 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 GCNT7Q6ZNI0 430 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 TPRG1Q6ZUI0 275 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 GLT6D1Q7Z4J2 308 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 GPR142Q7Z601 462 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 RNF130Q86XS8 419 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 SNX29P2Q8IUI4 249 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 CCDC71Q8IV32 467 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 FAM219AQ8IW50 185 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 PIANPQ8IYJ0 282 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 LIX1Q8N485 282 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 SIDT2Q8NBJ9 832 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 OR8J2Q8NGG1 315 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 OR10T2Q8NGX3 314 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ANGPTL6Q8NI99 470 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ZNF675Q8TD23 568 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 RPL3LQ92901 407 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 FOXN4Q96NZ1 517 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 MCCC1Q96RQ3 725 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 SDHCQ99643 169 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 TBCDQ9BTW9 1192 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 GTPBP2Q9BX10 602 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 CDCA4Q9BXL8 241 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ZNF350Q9GZX5 532 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 FN3KQ9H479 309 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 SYNDIG1Q9H7V2 258 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 POLE3Q9NRF9 147 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 PRR34Q9NV39 138 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ELOVL2Q9NXB9 296 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 VNN3Q9NY84 501 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 CNOT2Q9NZN8 540 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 PDP1Q9P0J1 537 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 BTNL2Q9UIR0 455 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ZNF229Q9UJW7 825 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 GMEB2Q9UKD1 530 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ZNF490Q9ULM2 529 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 RNF6Q9Y252 685 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ITM2BQ9Y287 266 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 PADI2Q9Y2J8 665 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 POLR3HQ9Y535 204 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ANGPTL3Q9Y5C1 460 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 V9GYQ6 96 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 PLXNB2O15031 1838 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 GBF1Q92538 1859 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 THSD7BQ9C0I4 1608 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 DOCK4Q8N1I0 1966 aa3.4□□□□□ -1.86
SMCHD1-208ENST00000583344 ZNF318Q5VUA4 2279 aa3.4□□□□□ -1.86
SMCHD1-208ENST00000583344 CXorf51AA0A1B0GTR3 108 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 C13orf42A0A1B0GVH6 325 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 CASTOR2A6NHX0 329 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 NCF1BA6NI72 391 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 SLC9B1P1A6NJY1 282 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 CENPXA8MT69 81 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 PDZK1P1A8MUH7 402 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 NCF1CA8MVU1 366 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 E5RI56 91 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 GFYI3L273 518 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 M0QZ92 97 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 PSMD11O00231 422 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 PDHXO00330 501 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 CLDN4O14493 209 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 RFXANKO14593 260 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 STX7O15400 261 aaKnown RBP3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 OR1I1O60431 355 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 ACSL4O60488 711 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 CLDN11O75508 207 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 STK16O75716 305 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 CCNKO75909 580 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 CD160O95971 181 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 KRT8P05787 483 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 ANXA5P08758 320 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 SBK2P0C263 348 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 PIPP12273 146 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 M6PRP20645 277 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 GADD45AP24522 165 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 CXCR2P25025 360 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 HLA-DMAP28067 261 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 RCVRNP35243 200 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 SOX6P35712 828 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 RGRP47804 291 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 CSNK1DP48730 415 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 PLXNA3P51805 1871 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 OR2B6P58173 313 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 LSM3P62310 102 aaKnown RBP3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 RPL38P63173 70 aaKnown RBP3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 SELENOWP63302 87 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 VLDLRP98155 873 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 RBBP4Q09028 425 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 SMARCB1Q12824 385 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 PPP1R8Q12972 351 aaKnown RBP3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 RIGQ13278 110 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 TRA2AQ13595 282 aaKnown RBP eCLIP3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 TEAD2Q15562 447 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 MAPK11Q15759 364 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 SGCBQ16585 318 aa3.4□□□□□ -1.87
SMCHD1-208ENST00000583344 CDKN3Q16667 212 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms