RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 MS4A18H0YCH9 400 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 ARHGEF9O43307 516 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 FZD7O75084 574 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 NEURL1O76050 574 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 AKR7A3O95154 331 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 GABARAPO95166 117 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 RENP00797 406 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 IGHMP01871 453 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 CNR1P21554 472 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 SRD5A2P31213 254 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 PYCR1P32322 319 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 ACVR1BP36896 505 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 SLC25A1P53007 311 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 RRADP55042 308 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 RPL27P61353 136 aaKnown RBP9.45□□□□□ -0.9
SS18-217ENST00000580958 TLE3Q04726 772 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 CLN3Q13286 438 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 AQP6Q13520 282 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 MELKQ14680 651 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 SPHARQ15513 63 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 ACKR1Q16570 336 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 MS4A18Q3C1V0 323 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 TMEM176BQ3YBM2 270 aaPredicted RBP9.45□□□□□ -0.9
SS18-217ENST00000580958 OR2G6Q5TZ20 316 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 H1FNTQ75WM6 255 aaPredicted RBP9.45□□□□□ -0.9
SS18-217ENST00000580958 YRDCQ86U90 279 aaKnown RBP9.45□□□□□ -0.9
SS18-217ENST00000580958 P2RY8Q86VZ1 359 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 ARIH2OSQ8N7S6 290 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 OR10H4Q8NGA5 316 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 ZNF519Q8TB69 540 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 ZNRF4Q8WWF5 429 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 SMPDL3BQ92485 455 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 TSC22D3Q99576 134 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 TBX5Q99593 518 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 MGLLQ99685 303 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 JAM3Q9BX67 310 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 HES7Q9BYE0 225 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 RACGAP1Q9H0H5 632 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 TXNIPQ9H3M7 391 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 CXorf56Q9H5V9 222 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 ADGRL4Q9HBW9 690 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 RPRD1BQ9NQG5 326 aaKnown RBP9.45□□□□□ -0.9
SS18-217ENST00000580958 ERVK13-1Q9NX77 482 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 HAO2Q9NYQ3 351 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 DNAJC13O75165 2243 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 ZNF407Q9C0G0 2248 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 A0A1W2PPW3 197 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 A0A1W2PRG6 482 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 C12orf71A8MTZ7 269 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 FAM171A2A8MVW0 826 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 GLCEO94923 617 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 SBK2P0C263 348 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 RFPL3SP0C7P2 107 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 HLA-DOBP13765 273 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 ZNF17P17021 662 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 GADD45AP24522 165 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 GDF1P27539 372 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 NAA10P41227 235 aaPredicted RBP9.44□□□□□ -0.9
SS18-217ENST00000580958 RGS6P49758 472 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 CLK1P49759 484 aaKnown RBP9.44□□□□□ -0.9
SS18-217ENST00000580958 DIO1P49895 249 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 WNT4P56705 351 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 B3GALT5-AS1P59052 145 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 LSM3P62310 102 aaKnown RBP9.44□□□□□ -0.9
SS18-217ENST00000580958 PUDPQ08623 228 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 C1DQ13901 141 aaKnown RBP9.44□□□□□ -0.9
SS18-217ENST00000580958 GGTLC2Q14390 218 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 PON3Q15166 354 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 CTF1Q16619 201 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 SLC35D3Q5M8T2 416 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 KLHL36Q8N4N3 616 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 OR2M7Q8NG81 312 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 OR6K6Q8NGW6 343 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 SMAP2Q8WU79 429 aaPredicted RBP9.44□□□□□ -0.9
SS18-217ENST00000580958 ASB10Q8WXI3 467 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 GATAD2BQ8WXI9 593 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 THAP4Q8WY91 577 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 NXPE2Q96DL1 559 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 TSSK2Q96PF2 358 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 CNN2Q99439 309 aaKnown RBP9.44□□□□□ -0.9
SS18-217ENST00000580958 FAM173AQ9BQD7 235 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 BCL7BQ9BQE9 202 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 ZNF649Q9BS31 505 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 DCUN1D5Q9BTE7 237 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 OR2B2Q9GZK3 357 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 SRA1Q9HD15 236 aaKnown RBP9.44□□□□□ -0.9
SS18-217ENST00000580958 ZFP64Q9NPA5 681 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 BOKQ9UMX3 212 aaPredicted RBP9.44□□□□□ -0.9
SS18-217ENST00000580958 HDGFL3Q9Y3E1 203 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 CACNA1CQ13936 2221 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 SPTBN2O15020 2390 aa9.44□□□□□ -0.9
SS18-217ENST00000580958 PHF3Q92576 2039 aaKnown RBP9.43□□□□□ -0.9
SS18-217ENST00000580958 A0A1W2PNV4 684 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 DAPL1A0PJW8 107 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 TRIM64BA6NI03 449 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 ZNF891A8MT65 544 aaPredicted RBP9.43□□□□□ -0.9
SS18-217ENST00000580958 NPIPA5E9PKD4 350 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 SULT2B1O00204 365 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 CCRL2O00421 344 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 XKRYO14609 159 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms