RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 IL7RP16871 459 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 USF1P22415 310 aaPredicted RBP5.84□□□□□ -1.47
VPS53-213ENST00000572334 PRPS1P60891 318 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ACTR3P61158 418 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 LSM11P83369 360 aaKnown RBP eCLIP5.84□□□□□ -1.47
VPS53-213ENST00000572334 TXNL4AP83876 142 aaKnown RBP5.84□□□□□ -1.47
VPS53-213ENST00000572334 HGFACQ04756 655 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 STX3Q13277 289 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ADIPOQQ15848 244 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 TBRG1Q3YBR2 411 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 RPS26P11Q5JNZ5 115 aaPredicted RBP5.84□□□□□ -1.47
VPS53-213ENST00000572334 C1orf146Q5VVC0 180 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ATG16L1Q676U5 607 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 WBP2NLQ6ICG8 309 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 NHLRC1Q6VVB1 395 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 Q6ZNX1 250 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ZNF621Q6ZSS3 439 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 CREB3L2Q70SY1 520 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 AAED1Q7RTV5 226 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 SPATA19Q7Z5L4 167 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 SERPINA11Q86U17 422 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 WDFY1Q8IWB7 410 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 C10orf111Q8N326 155 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 KDM8Q8N371 416 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 POMGNT2Q8NAT1 580 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 OR9I1Q8NGQ6 314 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 OR52P1PQ8NH57 321 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 SLC7A6OSQ96CW6 309 aaPredicted RBP5.84□□□□□ -1.47
VPS53-213ENST00000572334 MSI2Q96DH6 328 aaKnown RBP5.84□□□□□ -1.47
VPS53-213ENST00000572334 CMTM5Q96DZ9 223 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 FBXO17Q96EF6 278 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ZNF837Q96EG3 531 aaPredicted RBP5.84□□□□□ -1.47
VPS53-213ENST00000572334 AURKBQ96GD4 344 aaPredicted RBP5.84□□□□□ -1.47
VPS53-213ENST00000572334 DHRS1Q96LJ7 313 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ALKBH3Q96Q83 286 aaPredicted RBP5.84□□□□□ -1.47
VPS53-213ENST00000572334 SLC38A2Q96QD8 506 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 OR52E6Q96RD3 313 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ARPC5LQ9BPX5 153 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ZNF696Q9H7X3 374 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 C8orf4Q9NR00 106 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 DIABLOQ9NR28 239 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 PARPBPQ9NWS1 579 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 B3GAT1Q9P2W7 334 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 UPB1Q9UBR1 384 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 CDC42EP3Q9UKI2 254 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ZNF443Q9Y2A4 671 aaPredicted RBP5.84□□□□□ -1.47
VPS53-213ENST00000572334 IGKV1D-42A0A075B6H8 117 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 A0A1B0GVG6 124 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 A8MVM7 634 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 CENPBD1B2RD01 187 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 RPL36A-HNRNPH2H7BZ11 118 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 LMX1BO60663 402 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 IFNA2P01563 188 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 IGKV3-15P01624 115 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 BCHEP06276 602 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 GPIP06744 558 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 OCM2P0CE71 109 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 OCMP0CE72 109 aaPredicted RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 ZCCHC18P0CG32 403 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 NR2F1P10589 423 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 PNMTP11086 282 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 BMP2P12643 396 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 CDH2P19022 906 aaPredicted RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 THBS2P35442 1172 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 NR4A2P43354 598 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 HOXC5Q00444 222 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 NAAAQ02083 359 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 TGFBR3Q03167 851 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 SPCS2Q15005 226 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 EFNB3Q15768 340 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 ZSWIM7Q19AV6 140 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 MSMPQ1L6U9 139 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 ZNF829Q3KNS6 432 aaPredicted RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 SLC9B1Q4ZJI4 515 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 PHYHD1Q5SRE7 291 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 C1orf140Q5VVS0 124 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 CYB5R2Q6BCY4 276 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 NIPAL3Q6P499 406 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 ANKRD16Q6P6B7 361 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 LINC00299Q6ZSB3 139 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 IL17RELQ6ZVW7 336 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 DHDDSQ86SQ9 333 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 GPAT4Q86UL3 456 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 MSRB3Q8IXL7 192 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 ZNF440Q8IYI8 595 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 DEPDC4Q8N2C3 294 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 TRIML2Q8N7C3 387 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 GLB1L3Q8NCI6 653 aaPredicted RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 ZNF420Q8TAQ5 688 aaPredicted RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 MAGEE2Q8TD90 523 aaPredicted RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 STK35Q8TDR2 534 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 C10orf82Q8WW14 230 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 RASSF5Q8WWW0 418 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 TMEM158Q8WZ71 300 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 TRIM63Q969Q1 353 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 UTP4Q969X6 686 aaKnown RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 NMD3Q96D46 503 aaKnown RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 KTI12Q96EK9 354 aaPredicted RBP5.83□□□□□ -1.48
VPS53-213ENST00000572334 TMEM19Q96HH6 336 aa5.83□□□□□ -1.48
VPS53-213ENST00000572334 ZNF75AQ96N20 296 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms