RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CLEC4AQ9UMR7 237 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 HIF3AQ9Y2N7 669 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 SAMHD1Q9Y3Z3 626 aaKnown RBP18.25■□□□□ 0.51
VPS53-210ENST00000571456 HCFC1P51610 2035 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 ARRDC5A6NEK1 342 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 NPIPB13A6NJU9 1138 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 EEF1E1-BLOC1S5C9J1V9 151 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 NPIPB4C9JG80 1138 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 MS4A18H0YCH9 400 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 EEF1E1O43324 174 aaKnown RBP18.24■□□□□ 0.51
VPS53-210ENST00000571456 OR10H3O60404 316 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 ARHGDIAP52565 204 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 RPS4XP62701 263 aaKnown RBP18.24■□□□□ 0.51
VPS53-210ENST00000571456 MS4A18Q3C1V0 323 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 KIF18BQ86Y91 864 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 ZNF100Q8IYN0 542 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 RNASE6Q93091 150 aaKnown RBP18.24■□□□□ 0.51
VPS53-210ENST00000571456 ADAD1Q96M93 576 aaKnown RBP18.24■□□□□ 0.51
VPS53-210ENST00000571456 USB1Q9BQ65 265 aaKnown RBP18.24■□□□□ 0.51
VPS53-210ENST00000571456 B3GAT1Q9P2W7 334 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 AP4S1Q9Y587 144 aa18.24■□□□□ 0.51
VPS53-210ENST00000571456 FAM90A27PA6NNH2 459 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 LRRN3E7EW58 273 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 RAMP1O60894 148 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 SMNDC1O75940 238 aaKnown RBP eCLIP18.23■□□□□ 0.51
VPS53-210ENST00000571456 FOSL1P15407 271 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 AHCYP23526 432 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 UQCRC1P31930 480 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 OMPP47874 163 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 SORDQ00796 357 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 CCNIQ14094 377 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 C1orf94Q6P1W5 598 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 TBPL2Q6SJ96 375 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 TFAP2EQ6VUC0 442 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 ABHD12BQ7Z5M8 362 aaPredicted RBP18.23■□□□□ 0.51
VPS53-210ENST00000571456 OAFQ86UD1 273 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 POMGNT2Q8NAT1 580 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 OR4C15Q8NGM1 316 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 NRBF2Q96F24 287 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 TAS2R5Q9NYW4 299 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 VPS13CQ709C8 3753 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 FREM1Q5H8C1 2179 aa18.23■□□□□ 0.51
VPS53-210ENST00000571456 CLOCKO15516 846 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 RNF13O43567 381 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 PIP5K1CO60331 668 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 CCNB2O95067 398 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 PTNP21246 168 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 CBLP22681 906 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 FPR3P25089 353 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 FASP25445 335 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 IL1RL1Q01638 556 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 POU3F1Q03052 451 aaPredicted RBP18.22■□□□□ 0.51
VPS53-210ENST00000571456 FOXD4Q12950 439 aaPredicted RBP18.22■□□□□ 0.51
VPS53-210ENST00000571456 P2RY6Q15077 328 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 SEC23BQ15437 767 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 MICAQ29983 383 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 EXOC3L2Q2M3D2 409 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 RPL13AP3Q6NVV1 102 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 AAED1Q7RTV5 226 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 EPHX4Q8IUS5 362 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 LRRC17Q8N6Y2 441 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 SLCO4A1Q96BD0 722 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 BDH2Q9BUT1 245 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 RBM24Q9BX46 236 aaKnown RBP18.22■□□□□ 0.51
VPS53-210ENST00000571456 HDHD5Q9BXW7 423 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 OR10A4Q9H209 315 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 DLL4Q9NR61 685 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 NBEAL1Q6ZS30 2694 aa18.22■□□□□ 0.51
VPS53-210ENST00000571456 A0A1W2PRG6 482 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 CENPBD1B2RD01 187 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 BLOC1S5-TXNDC5H3BN57 136 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 TRAF3IP2O43734 574 aaPredicted RBP18.21■□□□□ 0.51
VPS53-210ENST00000571456 MAKP20794 623 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 GSTM3P21266 225 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 FUT4P22083 530 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 DAP3P51398 398 aaKnown RBP18.21■□□□□ 0.51
VPS53-210ENST00000571456 RPL18Q07020 188 aaKnown RBP18.21■□□□□ 0.51
VPS53-210ENST00000571456 TFF3Q07654 80 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 ZBED5Q49AG3 693 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 C1QTNF12Q5T7M4 302 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 FBXW9Q5XUX1 488 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 CASP12Q6UXS9 341 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 Q6ZT83 130 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 SSX8Q7RTT4 187 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 NUFIP2Q7Z417 695 aaKnown RBP18.21■□□□□ 0.51
VPS53-210ENST00000571456 ZIC4Q8N9L1 334 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 GNPDA2Q8TDQ7 276 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 FAM46AQ96IP4 442 aaKnown RBP18.21■□□□□ 0.51
VPS53-210ENST00000571456 MDFIQ99750 246 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 LINC00470Q9BZP3 86 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 UCK2Q9BZX2 261 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 SLCO5A1Q9H2Y9 848 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 C12orf49Q9H741 205 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 INIPQ9NRY2 104 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 SEC14L4Q9UDX3 406 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 MALT1Q9UDY8 824 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 MGAT4BQ9UQ53 548 aa18.21■□□□□ 0.51
VPS53-210ENST00000571456 FN1P02751 2386 aaKnown RBP18.2■□□□□ 0.5
VPS53-210ENST00000571456 KLF4O43474 513 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 E2F6O75461 281 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms