RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 EFCAB9A8MZ26 197 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 PDLIM1O00151 329 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 KLF4O43474 513 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 RNF13O43567 381 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 OR6A2O95222 327 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 THBDP07204 575 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 ITGA5P08648 1049 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 RAP2AP10114 183 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 IFNGR1P15260 489 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 KIR2DL3P43628 341 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 RPS4XP62701 263 aaKnown RBP17.23■□□□□ 0.35
CLN3-225ENST00000566824 MELKQ14680 651 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 SFRP5Q5T4F7 317 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 CARD17Q5XLA6 110 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 TMPRSS11FQ6ZWK6 438 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 ZER1Q7Z7L7 766 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 IGFN1Q86VF2 1251 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 LRRC75AQ8NAA5 344 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 SLCO5A1Q9H2Y9 848 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 MALT1Q9UDY8 824 aa17.23■□□□□ 0.35
CLN3-225ENST00000566824 SLC35F4A4IF30 521 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 TUBAL3A6NHL2 446 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 SAGP10523 405 aaPredicted RBP17.22■□□□□ 0.35
CLN3-225ENST00000566824 PSMB1P20618 241 aaKnown RBP17.22■□□□□ 0.35
CLN3-225ENST00000566824 COX5AP20674 150 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 PCYT1AP49585 367 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 IST1P53990 364 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 BIDP55957 195 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 SMIM11AP58511 58 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 OR2T5Q6IEZ7 315 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 SLC35D2Q76EJ3 337 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 ZNF433Q8N7K0 673 aaPredicted RBP17.22■□□□□ 0.35
CLN3-225ENST00000566824 OR2T29Q8NH02 315 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 S100PBPQ96BU1 408 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 ZNF837Q96EG3 531 aaPredicted RBP17.22■□□□□ 0.35
CLN3-225ENST00000566824 MMADHCQ9H3L0 296 aaPredicted RBP17.22■□□□□ 0.35
CLN3-225ENST00000566824 MCCC2Q9HCC0 563 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 RCE1Q9Y256 329 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 HIF3AQ9Y2N7 669 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 APCP25054 2843 aa17.22■□□□□ 0.35
CLN3-225ENST00000566824 SH3D21A4FU49 640 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 TNFRSF11BO00300 401 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 DNAJA1P31689 397 aaKnown RBP17.21■□□□□ 0.35
CLN3-225ENST00000566824 HMGA2P52926 109 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 FXYD6P3P58550 94 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 RUNX1T1Q06455 604 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 ITGADQ13349 1161 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 CAMK2DQ13557 499 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 P2RY6Q15077 328 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 RRM2BQ7LG56 351 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 BHLHA15Q7RTS1 189 aaPredicted RBP17.21■□□□□ 0.35
CLN3-225ENST00000566824 TMEM179BQ7Z7N9 219 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 OAFQ86UD1 273 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 PAPD5Q8NDF8 572 aaKnown RBP17.21■□□□□ 0.35
CLN3-225ENST00000566824 ANKK1Q8NFD2 765 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 OR9Q2Q8NGE9 314 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 ZC3HAV1LQ96H79 300 aaKnown RBP17.21■□□□□ 0.35
CLN3-225ENST00000566824 ALKBH3Q96Q83 286 aaPredicted RBP17.21■□□□□ 0.35
CLN3-225ENST00000566824 ACTR6Q9GZN1 396 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 ASB6Q9NWX5 421 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 U3KQV3 271 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 TACC2O95359 2948 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 ABCA4P78363 2273 aa17.21■□□□□ 0.35
CLN3-225ENST00000566824 HTR3EA5X5Y0 456 aa17.21■□□□□ 0.34
CLN3-225ENST00000566824 CLOCKO15516 846 aa17.21■□□□□ 0.34
CLN3-225ENST00000566824 HNRNPRO43390 633 aaKnown RBP17.21■□□□□ 0.34
CLN3-225ENST00000566824 FKBP6O75344 327 aa17.21■□□□□ 0.34
CLN3-225ENST00000566824 PTP4A3O75365 173 aa17.21■□□□□ 0.34
CLN3-225ENST00000566824 C1orf146Q5VVC0 180 aa17.21■□□□□ 0.34
CLN3-225ENST00000566824 INIPQ9NRY2 104 aa17.21■□□□□ 0.34
CLN3-225ENST00000566824 CCM2LQ9NUG4 571 aaPredicted RBP17.21■□□□□ 0.34
CLN3-225ENST00000566824 UPB1Q9UBR1 384 aa17.21■□□□□ 0.34
CLN3-225ENST00000566824 TMEM5Q9Y2B1 443 aa17.21■□□□□ 0.34
CLN3-225ENST00000566824 GPR52Q9Y2T5 361 aa17.21■□□□□ 0.34
CLN3-225ENST00000566824 SIAH2O43255 324 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 OR10H3O60404 316 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 SLC43A1O75387 559 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 RAD51DO75771 328 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 KRT36O76013 467 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 CNOT4O95628 575 aaKnown RBP17.2■□□□□ 0.34
CLN3-225ENST00000566824 ACKR1Q16570 336 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 ZBED5Q49AG3 693 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 ZNF770Q6IQ21 691 aaPredicted RBP17.2■□□□□ 0.34
CLN3-225ENST00000566824 PGBD2Q6P3X8 592 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 THSD4Q6ZMP0 1018 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 C20orf196Q8IYI0 205 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 CDK20Q8IZL9 346 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 POMGNT2Q8NAT1 580 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 FAM222BQ8WU58 562 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 KISS1RQ969F8 398 aaPredicted RBP17.2■□□□□ 0.34
CLN3-225ENST00000566824 POP5Q969H6 163 aaKnown RBP17.2■□□□□ 0.34
CLN3-225ENST00000566824 RSRC1Q96IZ7 334 aaKnown RBP17.2■□□□□ 0.34
CLN3-225ENST00000566824 LINC00470Q9BZP3 86 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 KCNN3Q9UGI6 736 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 IL20RAQ9UHF4 553 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 TMCC3Q9ULS5 477 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 SIGLEC7Q9Y286 467 aa17.2■□□□□ 0.34
CLN3-225ENST00000566824 UNC119BA6NIH7 251 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 MCIDASD6RGH6 385 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 M0R3G1 203 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms