RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 C3AR1Q16581 482 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 MS4A18Q3C1V0 323 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 SLC35F1Q5T1Q4 408 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 LCN1P1Q5VSP4 162 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 EEF1A1P5Q5VTE0 462 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 GTF2IRD2BQ6EKJ0 949 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 CXXC5Q7LFL8 322 aaKnown RBP11.45□□□□□ -0.58
CLK3-214ENST00000564096 FAM122BQ7Z309 247 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 P4HA3Q7Z4N8 544 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 GTF2IRD2Q86UP8 949 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 CCDC71Q8IV32 467 aaPredicted RBP11.45□□□□□ -0.58
CLK3-214ENST00000564096 ZNF786Q8N393 782 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 CISD2Q8N5K1 135 aaKnown RBP11.45□□□□□ -0.58
CLK3-214ENST00000564096 TCEANCQ8N8B7 351 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 OR9K2Q8NGE7 335 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 FNDC8Q8TC99 324 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 ZPLD1Q8TCW7 415 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 RFKQ969G6 155 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 ZNF845Q96IR2 970 aaPredicted RBP11.45□□□□□ -0.58
CLK3-214ENST00000564096 LRR1Q96L50 414 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 SNX18Q96RF0 628 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 NR1H4Q96RI1 486 aaPredicted RBP11.45□□□□□ -0.58
CLK3-214ENST00000564096 UCN2Q96RP3 112 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 IL4I1Q96RQ9 567 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 SLX1AQ9BQ83 275 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 H2AFY2Q9P0M6 372 aaPredicted RBP11.45□□□□□ -0.58
CLK3-214ENST00000564096 KLHL13Q9P2N7 655 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 B3GAT1Q9P2W7 334 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 SH3D21A4FU49 640 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 ZNF726A6NNF4 738 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 TTLL8A6PVC2 850 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 CLCA1A8K7I4 914 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 CENPBD1B2RD01 187 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 PRODHO43272 600 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 TRAF3IP2O43734 574 aaPredicted RBP11.44□□□□□ -0.58
CLK3-214ENST00000564096 AHCYL1O43865 530 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 WDR1O75083 606 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 TNFAIP8O95379 198 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 HIST1H1CP16403 213 aaKnown RBP11.44□□□□□ -0.58
CLK3-214ENST00000564096 CHN2P52757 468 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 SLC16A1P53985 500 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 LGALS3BPQ08380 585 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 RASGEF1BQ0VAM2 473 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 ITGADQ13349 1161 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 MELKQ14680 651 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 SLC17A1Q14916 467 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 MESTQ5EB52 335 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 TMEM201Q5SNT2 666 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 SLC25A30Q5SVS4 291 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 NXNL2Q5VZ03 156 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 ZNF324BQ6AW86 544 aaPredicted RBP11.44□□□□□ -0.58
CLK3-214ENST00000564096 LEG1Q6P5S2 330 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 DNM1P34Q6PK57 102 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 CCDC103Q8IW40 242 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 FAM26EQ8N5C1 309 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 ARIH2OSQ8N7S6 290 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 SDR9C7Q8NEX9 313 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 OR52E2Q8NGJ4 325 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 OR4K13Q8NH42 304 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 RHOXF1Q8NHV9 184 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 ZNF519Q8TB69 540 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 CNIH3Q8TBE1 160 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 FNDC9Q8TBE3 224 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 FBLIM1Q8WUP2 373 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 ASB10Q8WXI3 467 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 HDAC2Q92769 488 aaKnown RBP11.44□□□□□ -0.58
CLK3-214ENST00000564096 OTULINQ96BN8 352 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 RASD2Q96D21 266 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 Q96M85 177 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 TUBA1CQ9BQE3 449 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 ALG12Q9BV10 488 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 ENKD1Q9H0I2 346 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 GP6Q9HCN6 339 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 SCN3BQ9NY72 215 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 ZNF226Q9NYT6 803 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 TNFRSF10DQ9UBN6 386 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 ZNF346Q9UL40 294 aaKnown RBP11.44□□□□□ -0.58
CLK3-214ENST00000564096 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.44□□□□□ -0.58
CLK3-214ENST00000564096 RCE1Q9Y256 329 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 GPR52Q9Y2T5 361 aa11.44□□□□□ -0.58
CLK3-214ENST00000564096 EPG5Q9HCE0 2579 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 CHD8Q9HCK8 2581 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 CFAP47Q6ZTR5 3102 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 IRGMA1A4Y4 181 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 SLC22A31A6NKX4 558 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 AHRRA9YTQ3 701 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 ZNF814B7Z6K7 855 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 TPOP07202 933 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 HLA-DOBP13765 273 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 EDN3P14138 238 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 GABRB1P18505 474 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 TDGF1P3P51864 188 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 CDH11P55287 796 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 BIDP55957 195 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 CLRN1P58418 232 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 CXCR4P61073 352 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 RPS7P62081 194 aaKnown RBP11.43□□□□□ -0.58
CLK3-214ENST00000564096 CRMP1Q14194 572 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 OCLNQ16625 522 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 RBM48Q5RL73 367 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms