RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TCN2P20062 427 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 FUT4P22083 530 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 MST1P26927 711 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 DCTDP32321 178 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 AQP2P41181 271 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 RPS5P46782 204 aaKnown RBP6.8□□□□□ -1.32
VPS39-204ENST00000561818 ENTPD1P49961 510 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 CCR9P51686 369 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 FBXW4P57775 412 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 MLF1P58340 268 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 LSM3P62310 102 aaKnown RBP6.8□□□□□ -1.32
VPS39-204ENST00000561818 SIRPAP78324 504 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 LSM11P83369 360 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS39-204ENST00000561818 INSM1Q01101 510 aaPredicted RBP6.8□□□□□ -1.32
VPS39-204ENST00000561818 EGR4Q05215 589 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 AIMP2Q13155 320 aaKnown RBP6.8□□□□□ -1.32
VPS39-204ENST00000561818 DNASE1L3Q13609 305 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 FHL1Q13642 323 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 CDK5R1Q15078 307 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 POU4F3Q15319 338 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 FAM189A2Q15884 450 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 TRIM16LQ309B1 348 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 TEX30Q5JUR7 227 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 ZNF362Q5T0B9 420 aaPredicted RBP6.8□□□□□ -1.32
VPS39-204ENST00000561818 THEM4Q5T1C6 240 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 H3F3CQ6NXT2 135 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 PAQR6Q6TCH4 344 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 LRRN1Q6UXK5 716 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 CDH24Q86UP0 819 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 LHFPL3Q86UP9 236 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 SIRT6Q8N6T7 355 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 GDPD1Q8N9F7 314 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 CCDC54Q8NEL0 328 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 OR2M3Q8NG83 312 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 OR4F15Q8NGB8 312 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 OR1J4Q8NGS1 313 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 CHPT1Q8WUD6 406 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 DEDD2Q8WXF8 326 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 TAAR8Q969N4 342 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 KTI12Q96EK9 354 aaPredicted RBP6.8□□□□□ -1.32
VPS39-204ENST00000561818 C4orf36Q96KX1 117 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 C5orf34Q96MH7 638 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 RBP7Q96R05 134 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 NMNAT3Q96T66 252 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 CENPOQ9BU64 300 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 MROQ9BYG7 248 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 NRSN2Q9GZP1 204 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 SLC24A3Q9HC58 644 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 SMURF1Q9HCE7 757 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 NCDNQ9UBB6 729 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 CLEC2DQ9UHP7 191 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 CMAHPQ9Y471 501 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 CHCHD2Q9Y6H1 151 aaPredicted RBP6.8□□□□□ -1.32
VPS39-204ENST00000561818 SPTBP11277 2137 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 A0A1W2PQL4 384 aaPredicted RBP6.79□□□□□ -1.32
VPS39-204ENST00000561818 TMEM72A0PK05 275 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 LIPT2A6NK58 231 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 TMEM200CA6NKL6 621 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 TTLL8A6PVC2 850 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 GABRPO00591 440 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 CDX4O14627 284 aaPredicted RBP6.79□□□□□ -1.32
VPS39-204ENST00000561818 KHDRBS3O75525 346 aaKnown RBP6.79□□□□□ -1.32
VPS39-204ENST00000561818 GPX5O75715 221 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 UPK1BO75841 260 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 DKK1O94907 266 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 CD2P06729 351 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 TFPIP10646 304 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 CCL4P13236 92 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 ZNF823P16415 610 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 ZNF28P17035 718 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 GRPRP30550 384 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 SRD5A2P31213 254 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 ACVR1BP36896 505 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 OPRL1P41146 370 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 NR4A2P43354 598 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 CYB561P49447 251 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 MLLT10P55197 1068 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 ERVK-25P63136 954 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 ROM1Q03395 351 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 NDUFAF6Q330K2 333 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 TBC1D25Q3MII6 688 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 OR2G6Q5TZ20 316 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 HBMQ6B0K9 141 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 DMKNQ6E0U4 476 aaPredicted RBP6.79□□□□□ -1.32
VPS39-204ENST00000561818 FDX2Q6P4F2 183 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 LYPD8Q6UX82 237 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 PRR23CQ6ZRP0 262 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 SHISA6Q6ZSJ9 500 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 LRRC28Q86X40 367 aaPredicted RBP6.79□□□□□ -1.32
VPS39-204ENST00000561818 KLBQ86Z14 1044 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 UEVLDQ8IX04 471 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 CLEC1AQ8NC01 280 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 OR10G3Q8NGC4 313 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 ZNF519Q8TB69 540 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 RPS4Y2Q8TD47 263 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 TM9SF4Q92544 642 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 RPL3LQ92901 407 aaKnown RBP6.79□□□□□ -1.32
VPS39-204ENST00000561818 MIB2Q96AX9 1013 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 COX4I2Q96KJ9 171 aa6.79□□□□□ -1.32
VPS39-204ENST00000561818 LMF1Q96S06 567 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms