RNA–Protein interactions for RNA: ENST00000561359.1

HERC1-213, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 551 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-213ENST00000561359 LAT2Q9GZY6 243 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 CENPHQ9H3R5 247 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 RHOJQ9H4E5 214 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 GLIPR2Q9H4G4 154 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 C16orf95Q9H693 158 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 NOL11Q9H8H0 719 aaKnown RBP4.44□□□□□ -1.7
HERC1-213ENST00000561359 SAP30LQ9HAJ7 183 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 FARSBQ9NSD9 589 aaKnown RBP4.44□□□□□ -1.7
HERC1-213ENST00000561359 ZNF446Q9NWS9 450 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 NMRK1Q9NWW6 199 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 GIN1Q9NXP7 522 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 RNF14Q9UBS8 474 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 NFU1Q9UMS0 254 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 CHMP2BQ9UQN3 213 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 MTO1Q9Y2Z2 717 aaKnown RBP4.44□□□□□ -1.7
HERC1-213ENST00000561359 HDGFL3Q9Y3E1 203 aa4.44□□□□□ -1.7
HERC1-213ENST00000561359 SPIN1Q9Y657 262 aaPredicted RBP4.44□□□□□ -1.7
HERC1-213ENST00000561359 V9GYY5 206 aaPredicted RBP4.44□□□□□ -1.7
HERC1-213ENST00000561359 SYCE1LA8MT33 242 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 E9PQ18 207 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 PCDH7O60245 1069 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 EIF1BO60739 113 aaKnown RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 PDYNP01213 254 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 IGHV4-59P01825 116 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 ACP2P11117 423 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 CD79AP11912 226 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 IGLL1P15814 213 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 MAKP20794 623 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 MSX2P35548 267 aaPredicted RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 ELK3P41970 407 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 ALDH18A1P54886 795 aaKnown RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 SH3BGRP55822 239 aaPredicted RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 SEC61A1P61619 476 aaKnown RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 GNB2P62879 340 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 SLC35A1P78382 337 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 ARF1P84077 181 aaKnown RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 SLC3A1Q07837 685 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 LCP2Q13094 533 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 ATP6AP1LQ52LC2 224 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 KLHL26Q53HC5 615 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 CAVIN1Q6NZI2 390 aaKnown RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 LRRN1Q6UXK5 716 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 GDPGP1Q6ZNW5 385 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 RNF144BQ7Z419 303 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 GPAT4Q86UL3 456 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 LYG1Q8N1E2 194 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 SPICQ8N5J4 248 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 OR9K2Q8NGE7 335 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 C16orf78Q8WTQ4 265 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 TMEM234Q8WY98 164 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 ST8SIA1Q92185 356 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 R3HDM4Q96D70 268 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 OTUB1Q96FW1 271 aaPredicted RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 UBXN10Q96LJ8 280 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 AMDHD1Q96NU7 426 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 ZNF385AQ96PM9 386 aaKnown RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 ATOH8Q96SQ7 321 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 THUMPD3Q9BV44 507 aaKnown RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 SHCBP1LQ9BZQ2 653 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 OR11A1Q9GZK7 315 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 NELFAQ9H3P2 528 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 NMRAL1Q9HBL8 299 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 TMEM165Q9HC07 324 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 NKIRAS2Q9NYR9 191 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 TMEM181Q9P2C4 612 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 VPS29Q9UBQ0 182 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 CHRNA9Q9UGM1 479 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 IL20RAQ9UHF4 553 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 RPUSD1Q9UJJ7 312 aaKnown RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 FOXJ3Q9UPW0 622 aa4.43□□□□□ -1.7
HERC1-213ENST00000561359 REXO2Q9Y3B8 237 aaKnown RBP4.43□□□□□ -1.7
HERC1-213ENST00000561359 SLC22A23A1A5C7 686 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 ERICH4A6NGS2 130 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 POC1B-GALNT4F8VUJ3 575 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 OR7A17O14581 309 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 ZNF264O43296 627 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 ATP8B1O43520 1251 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 EIF4E2O60573 245 aaKnown RBP4.42□□□□□ -1.7
HERC1-213ENST00000561359 PIAS1O75925 651 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 TSPAN9O75954 239 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 RSL1D1O76021 490 aaKnown RBP4.42□□□□□ -1.7
HERC1-213ENST00000561359 HSPA4LO95757 839 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 MBD3O95983 291 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 CLPTM1O96005 669 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 MT-ND5P03915 603 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 UROSP10746 265 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 UBL4AP11441 157 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 ZNF35P13682 527 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 CCNA2P20248 432 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 DDCP20711 480 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 IVDP26440 423 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 GABRA5P31644 462 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 LSP1P33241 339 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 APOBEC1P41238 236 aaKnown RBP4.42□□□□□ -1.7
HERC1-213ENST00000561359 MAP3K8P41279 467 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 SLC6A9P48067 706 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 SELENOPP49908 381 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 KLF3P57682 345 aaPredicted RBP4.42□□□□□ -1.7
HERC1-213ENST00000561359 BPIFB3P59826 476 aa4.42□□□□□ -1.7
HERC1-213ENST00000561359 KRTAP10-11P60412 298 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms