RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 LSM11P83369 360 aaKnown RBP eCLIP6.57□□□□□ -1.36
USP3-210ENST00000559192 CYCSP99999 105 aaKnown RBP6.57□□□□□ -1.36
USP3-210ENST00000559192 CDK5Q00535 292 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 ARHGAP19Q14CB8 494 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 IRF4Q15306 451 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 RSU1Q15404 277 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 FAM26DQ5JW98 314 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 AWAT2Q6E213 333 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 RNF165Q6ZSG1 346 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 NDUFAF7Q7L592 441 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 P4HA3Q7Z4N8 544 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 PXKQ7Z7A4 578 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 KDM8Q8N371 416 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 SLAMF9Q96A28 289 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 MMABQ96EY8 250 aaPredicted RBP6.57□□□□□ -1.36
USP3-210ENST00000559192 SLC35A4Q96G79 324 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 CXorf58Q96LI9 332 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 NRTNQ99748 197 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 MARVELD1Q9BSK0 173 aa6.57□□□□□ -1.36
USP3-210ENST00000559192 OTOL1A6NHN0 477 aaPredicted RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 IMPA2O14732 288 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 LANCL1O43813 399 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 CD160O95971 181 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 SEMG1P04279 462 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 AMY2BP19961 511 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 DCTDP32321 178 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 IRS1P35568 1242 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 CASRP41180 1078 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 IL13RA1P78552 427 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 PRDX1Q06830 199 aaKnown RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 EIF4EBP2Q13542 120 aaPredicted RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 ZNF542PQ5EBM4 170 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 CLLU1Q5K131 121 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 KCNIP4Q6PIL6 250 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 FIGLAQ6QHK4 219 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 PRR22Q8IZ63 422 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 OR8D4Q8NGM9 314 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 OR2T4Q8NH00 348 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 RAB39BQ96DA2 213 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 C14orf79Q96F83 325 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 LYSMD1Q96S90 227 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 ZDHHC5Q9C0B5 715 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 C8orf33Q9H7E9 229 aaPredicted RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 DLL4Q9NR61 685 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 A0A1W2PR48 441 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 SYT5O00445 386 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 RDH16O75452 317 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 PAPLNO95428 1278 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 ERCC1P07992 297 aaPredicted RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 LIMS3P0CW19 117 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 LIMS4P0CW20 117 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 UBL4AP11441 157 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 CEBPBP17676 345 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 ZP3P21754 424 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 GDI1P31150 447 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 ZNF41P51814 821 aaPredicted RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 GPR85P60893 370 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 RPL23AP62750 156 aaKnown RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 RNF212Q495C1 297 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 CARD17Q5XLA6 110 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 ZNF776Q68DI1 518 aaPredicted RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 ALKBH2Q6NS38 261 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 SLC18B1Q6NT16 456 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 SLC48A1Q6P1K1 146 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 TTLL10Q6ZVT0 673 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 SLC35D2Q76EJ3 337 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 DPY19L4Q7Z388 723 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 CMIPQ8IY22 773 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 OR4C5Q8NGB2 326 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 SMIM3Q9BZL3 60 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 RNF32Q9H0A6 362 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 MOB1AQ9H8S9 216 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 SCPEP1Q9HB40 452 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 LRIT2A6NDA9 550 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 PPM1DO15297 605 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 PRAMEF4O60810 478 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 ADH1BP00325 375 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 AK1P00568 194 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 OR2T7P0C7T2 308 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 PVRP15151 417 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 TRHRP34981 398 aaPredicted RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 PRPS1P60891 318 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 RPS21P63220 83 aaKnown RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 PRAMEF9Q5VWM5 478 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 VASNQ6EMK4 673 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 ADAM5Q6NVV9 412 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 KCTD18Q6PI47 426 aaPredicted RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 BPIFB2Q8N4F0 458 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 OR2T27Q8NH04 317 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 SDHCQ99643 169 aaPredicted RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 NELFAQ9H3P2 528 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 PLEKHA3Q9HB20 300 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 KIF25Q9UIL4 384 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 LSM5Q9Y4Y9 91 aaKnown RBP6.56□□□□□ -1.36
USP3-210ENST00000559192 TMEM14AQ9Y6G1 99 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 AGAP14A8MT82 685 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 TMEM150CB9EJG8 249 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 MED6O75586 246 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 CTSLP07711 333 aa6.56□□□□□ -1.36
USP3-210ENST00000559192 ADRB1P08588 477 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms