RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 TEX47Q8TBZ9 253 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 M1APQ8TC57 530 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 SHC3Q92529 594 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 CIDECQ96AQ7 238 aaPredicted RBP3.53□□□□□ -1.84
PRPF39-212ENST00000557477 CEP170P1Q96L14 293 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 POLR3FQ9H1D9 316 aaPredicted RBP3.53□□□□□ -1.84
PRPF39-212ENST00000557477 COG4Q9H9E3 785 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 MEAF6Q9HAF1 191 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 LY9Q9HBG7 655 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 EXOSC3Q9NQT5 275 aaKnown RBP3.53□□□□□ -1.84
PRPF39-212ENST00000557477 SENP1Q9P0U3 644 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 GALPQ9UBC7 116 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 EIF3LQ9Y262 564 aaKnown RBP3.53□□□□□ -1.84
PRPF39-212ENST00000557477 TET1Q8NFU7 2136 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 ZDBF2Q9HCK1 2354 aa3.53□□□□□ -1.84
PRPF39-212ENST00000557477 ZFHX2Q9C0A1 2572 aaPredicted RBP3.52□□□□□ -1.85
PRPF39-212ENST00000557477 C15orf38-AP3S2A0A0A6YYH1 394 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 A0A0D9SFI3 127 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 HIDE1A8MVS5 230 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 MIF4GDA9UHW6 222 aaKnown RBP3.52□□□□□ -1.85
PRPF39-212ENST00000557477 PFDN6O15212 129 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 RIPK2O43353 540 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 SPOPO43791 374 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 PALMO75781 387 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 TM7SF2O76062 418 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 KRT75O95678 551 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 GNA14O95837 355 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 CSF2P04141 144 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 S100A9P06702 114 aaKnown RBP3.52□□□□□ -1.85
PRPF39-212ENST00000557477 DCNP07585 359 aaKnown RBP3.52□□□□□ -1.85
PRPF39-212ENST00000557477 SLC35E2P0CK97 266 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 POU2F1P14859 743 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 ATP6V1C1P21283 382 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 HTR2AP28223 471 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 HOXA6P31267 233 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 PCK1P35558 622 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 LONP1P36776 959 aaKnown RBP3.52□□□□□ -1.85
PRPF39-212ENST00000557477 EMDP50402 254 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 NOVA1P51513 510 aaKnown RBP3.52□□□□□ -1.85
PRPF39-212ENST00000557477 SPAG1Q07617 926 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 SNTB2Q13425 540 aaKnown RBP3.52□□□□□ -1.85
PRPF39-212ENST00000557477 DMC1Q14565 340 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 NCF4Q15080 339 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 ALX1Q15699 326 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 CAMK4Q16566 473 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 C15orf32Q32M92 178 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 TIMM50Q3ZCQ8 353 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 CEP55Q53EZ4 464 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 FBXO48Q5FWF7 155 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 RNLSQ5VYX0 342 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 ATL3Q6DD88 541 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 OR52E8Q6IFG1 317 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 TRPM8Q7Z2W7 1104 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 HPS6Q86YV9 775 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 LRRC34Q8IZ02 419 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 BPIFB2Q8N4F0 458 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 DNAAF3Q8N9W5 541 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 VN1R2Q8NFZ6 395 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 OR2T34Q8NGX1 318 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 OR8K3Q8NH51 312 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 FANK1Q8TC84 345 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 AGR3Q8TD06 166 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 ADAMTS16Q8TE57 1224 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 GTSF1Q8WW33 167 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 THRSPQ92748 146 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 OSTF1Q92882 214 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 AKR1E2Q96JD6 320 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 TCEANC2Q96MN5 208 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 CENPKQ9BS16 269 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 RAB33BQ9H082 229 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 POLD4Q9HCU8 107 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 ANAPC7Q9UJX3 599 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 CHTOPQ9Y3Y2 248 aaKnown RBP3.52□□□□□ -1.85
PRPF39-212ENST00000557477 BRWD1Q9NSI6 2320 aa3.52□□□□□ -1.85
PRPF39-212ENST00000557477 IGSF9BQ9UPX0 1349 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 TECTAO75443 2155 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 HEATR9A2RTY3 570 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 OR6C74A6NCV1 312 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 FRG2CA6NGY1 282 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 LRRIQ4A6NIV6 560 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 A8MX80 341 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 CLDN5O00501 218 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 SLC17A2O00624 439 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 XPO1O14980 1071 aaKnown RBP3.51□□□□□ -1.85
PRPF39-212ENST00000557477 ANGPT2O15123 496 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 STX7O15400 261 aaKnown RBP3.51□□□□□ -1.85
PRPF39-212ENST00000557477 BCL2L11O43521 198 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 NDUFA2O43678 99 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 N4BP1O75113 896 aaKnown RBP3.51□□□□□ -1.85
PRPF39-212ENST00000557477 MFN2O95140 757 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 KRT8P05787 483 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 PABPC4LP0CB38 370 aaKnown RBP3.51□□□□□ -1.85
PRPF39-212ENST00000557477 UBTFL6P0CB48 400 aaPredicted RBP3.51□□□□□ -1.85
PRPF39-212ENST00000557477 CLUP10909 449 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 CALB2P22676 271 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 GNA11P29992 359 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 BDKRB1P46663 353 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 GSSP48637 474 aa3.51□□□□□ -1.85
PRPF39-212ENST00000557477 RPL34P49207 117 aaKnown RBP3.51□□□□□ -1.85
PRPF39-212ENST00000557477 LIM2P55344 173 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms