RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SFXN3Q9BWM7 321 aa11.36□□□□□ -0.59
SHMT2-227ENST00000557269 GABARAPL1Q9H0R8 117 aa11.36□□□□□ -0.59
SHMT2-227ENST00000557269 OPN3Q9H1Y3 402 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-227ENST00000557269 OR52D1Q9H346 318 aa11.36□□□□□ -0.59
SHMT2-227ENST00000557269 PLSCR4Q9NRQ2 329 aa11.36□□□□□ -0.59
SHMT2-227ENST00000557269 INIPQ9NRY2 104 aa11.36□□□□□ -0.59
SHMT2-227ENST00000557269 EMC3Q9P0I2 261 aa11.36□□□□□ -0.59
SHMT2-227ENST00000557269 ZNF629Q9UEG4 869 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-227ENST00000557269 PRSS50Q9UI38 385 aa11.36□□□□□ -0.59
SHMT2-227ENST00000557269 NOSIPQ9Y314 301 aaKnown RBP11.36□□□□□ -0.59
SHMT2-227ENST00000557269 EMC9Q9Y3B6 208 aa11.36□□□□□ -0.59
SHMT2-227ENST00000557269 ADAM18Q9Y3Q7 739 aa11.36□□□□□ -0.59
SHMT2-227ENST00000557269 GPR171O14626 319 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 SMNDC1O75940 238 aaKnown RBP eCLIP11.35□□□□□ -0.59
SHMT2-227ENST00000557269 ZNF432O94892 652 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 NDUFB2O95178 105 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 IL18BPO95998 194 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 IGHV3-9P01782 118 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 ANXA8P13928 327 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 CHRNB4P30926 498 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 OPRM1P35372 400 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 OR3A2P47893 321 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 BIDP55957 195 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 CTXN1P60606 82 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 PRPS1P60891 318 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 ERVK-25P63136 954 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 RUNX1T1Q06455 604 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 TOP3AQ13472 1001 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-227ENST00000557269 ACKR1Q16570 336 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 RFX4Q33E94 735 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 ANKDD1AQ495B1 522 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 ARMC4Q5T2S8 1044 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 CARD17Q5XLA6 110 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 NIPAL3Q6P499 406 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 SMARCD3Q6STE5 483 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 TFAP2EQ6VUC0 442 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 RASSF6Q6ZTQ3 369 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 AAED1Q7RTV5 226 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 TMEM123Q8N131 208 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 OR6K3Q8NGY3 331 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 LILRB4Q8NHJ6 448 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 FANK1Q8TC84 345 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 TSPAN32Q96QS1 320 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 OR2M2Q96R28 347 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 SLC29A1Q99808 456 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 KATNB1Q9BVA0 655 aa11.35□□□□□ -0.59
SHMT2-227ENST00000557269 TMEFF2Q9UIK5 374 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-227ENST00000557269 ZNF346Q9UL40 294 aaKnown RBP11.35□□□□□ -0.59
SHMT2-227ENST00000557269 RRP15Q9Y3B9 282 aaKnown RBP11.35□□□□□ -0.59
SHMT2-227ENST00000557269 SLC35F4A4IF30 521 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 NKX2-6A6NCS4 301 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 FAM90A27PA6NNH2 459 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 SOCS2O14508 198 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 MRPL33O75394 65 aaKnown RBP11.34□□□□□ -0.59
SHMT2-227ENST00000557269 AGFG2O95081 481 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 PPP1R3DO95685 299 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 IGHMP01871 453 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 CD8BP10966 210 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 GSTM3P21266 225 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 RPL4P36578 427 aaKnown RBP11.34□□□□□ -0.59
SHMT2-227ENST00000557269 SMSP52788 366 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 PPP2R2BQ00005 443 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 CAMK2DQ13557 499 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 SLC36A3Q495N2 470 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 CLEC12AQ5QGZ9 265 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 PHYHD1Q5SRE7 291 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 TSPO2Q5TGU0 170 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 LPCAT4Q643R3 524 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 KDM4DQ6B0I6 523 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 ZNF474Q6S9Z5 364 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-227ENST00000557269 CASP12Q6UXS9 341 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 LINGO2Q7L985 606 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 FAM122BQ7Z309 247 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 LUZP2Q86TE4 346 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 CBR4Q8N4T8 237 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 ASB10Q8WXI3 467 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 Q96M85 177 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 GPX7Q96SL4 187 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-227ENST00000557269 TACO1Q9BSH4 297 aaKnown RBP11.34□□□□□ -0.59
SHMT2-227ENST00000557269 OSBPL10Q9BXB5 764 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 TXNIPQ9H3M7 391 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 NRIP3Q9NQ35 241 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 SLC7A10Q9NS82 523 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 IL20Q9NYY1 176 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 COQ3Q9NZJ6 369 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 JKAMPQ9P055 326 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 PROCRQ9UNN8 238 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 CDH10Q9Y6N8 788 aa11.34□□□□□ -0.59
SHMT2-227ENST00000557269 A0A1W2PRG6 482 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 A8MXE2 369 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 EEF1E1-BLOC1S5C9J1V9 151 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 H0YHG0 523 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 DVL2O14641 736 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 EI24O14681 340 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 IMPA2O14732 288 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 EEF1E1O43324 174 aaKnown RBP11.33□□□□□ -0.6
SHMT2-227ENST00000557269 MGRN1O60291 552 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 UPK3AO75631 287 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 BCL10O95999 233 aa11.33□□□□□ -0.6
SHMT2-227ENST00000557269 CD14P08571 375 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms