RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CDCA3Q99618 268 aaPredicted RBP13.6□□□□□ -0.23
CUX1-215ENST00000556210 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.6□□□□□ -0.231e-6■■□□□ 13.1
CUX1-215ENST00000556210 LIN7BQ9HAP6 207 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 FGF20Q9NP95 211 aaPredicted RBP13.6□□□□□ -0.23
CUX1-215ENST00000556210 PLEKHA6Q9Y2H5 1048 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 SCN8AQ9UQD0 1980 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 ARPC5O15511 151 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 BRINP1O60477 761 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 CTNSO60931 367 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 KRT33AO76009 404 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 UTS2O95399 124 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 ZIC2O95409 532 aaPredicted RBP13.6□□□□□ -0.23
CUX1-215ENST00000556210 ART1P52961 327 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 YPEL5P62699 121 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 MEP1BQ16820 701 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 KCTD9Q7L273 389 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 ARMC10Q8N2F6 343 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 GAS2L1Q99501 681 aaPredicted RBP13.6□□□□□ -0.23
CUX1-215ENST00000556210 ZNF350Q9GZX5 532 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 ZNF337Q9Y3M9 751 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 V9GY05 133 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 TEX51A0A1B0GUA7 166 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 POU3F3P20264 500 aaPredicted RBP13.6□□□□□ -0.23
CUX1-215ENST00000556210 TSFMP43897 325 aaKnown RBP13.6□□□□□ -0.23
CUX1-215ENST00000556210 GRK1Q15835 563 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 ZNF227Q86WZ6 799 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 TOR1AIP2Q8NFQ8 470 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 SEC22CQ9BRL7 303 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 MARVELD1Q9BSK0 173 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 MED18Q9BUE0 208 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 ACTR6Q9GZN1 396 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 MED17Q9NVC6 651 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 FLRT3Q9NZU0 649 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 KLK11Q9UBX7 282 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 KIAA1024LP59773 190 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 BTG1P62324 171 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 C1QL3Q5VWW1 255 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 SLC22A10Q63ZE4 541 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 ALKBH2Q6NS38 261 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 FAM180AQ6UWF9 173 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 IDO2Q6ZQW0 420 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 GPR155Q7Z3F1 870 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 RSPO3Q9BXY4 272 aaPredicted RBP13.59□□□□□ -0.23
CUX1-215ENST00000556210 C8orf33Q9H7E9 229 aaPredicted RBP13.59□□□□□ -0.23
CUX1-215ENST00000556210 COMMD9Q9P000 198 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 LSM2Q9Y333 95 aaKnown RBP13.59□□□□□ -0.23
CUX1-215ENST00000556210 C13orf42A0A1B0GVH6 325 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 LANCL1O43813 399 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 ZNF250P15622 560 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 PER3P56645 1201 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 MLC1Q15049 377 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 TMEM201Q5SNT2 666 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 CORO6Q6QEF8 472 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 TEX261Q6UWH6 196 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 ZNF321PQ8N8H1 164 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 RNF170Q96K19 258 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 ABHD1Q96SE0 405 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 KCNE5Q9UJ90 142 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 DHDHQ9UQ10 334 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 U3KQ87 197 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 IGHV5-51A0A0C4DH38 117 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 SPI1P17947 270 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 FXYD6P3P58550 94 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 POU4F2Q12837 409 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 EXOSC2Q13868 293 aaKnown RBP13.59□□□□□ -0.23
CUX1-215ENST00000556210 OLFML2AQ68BL7 652 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 OR10K2Q6IF99 312 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 ZCCHC12Q6PEW1 402 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 ARSKQ6UWY0 536 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 HSD17B8Q92506 261 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 SLCO1B1Q9Y6L6 691 aa13.59□□□□□ -0.23
CUX1-215ENST00000556210 SHISA8B8ZZ34 492 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 ZNF593O00488 134 aaPredicted RBP13.58□□□□□ -0.24
CUX1-215ENST00000556210 CBX7O95931 251 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 SLC2A1P11166 492 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 RBMS1P29558 406 aaKnown RBP13.58□□□□□ -0.24
CUX1-215ENST00000556210 PRPS1P60891 318 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 PRICKLE4Q2TBC4 344 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 PRAMEF20Q5VT98 475 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 FAM198BQ6UWH4 519 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 ALKAL2Q6UX46 152 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 C3P1Q6ZMU1 363 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 EMC7Q9NPA0 242 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 FGF21Q9NSA1 209 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 SHISA3A0PJX4 238 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 LEUTXA8MZ59 168 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 ZGLP1P0C6A0 271 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 SRMP19623 302 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 S1PR1P21453 382 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 NUDT1P36639 197 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 ZNF136P52737 540 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 PSG6Q00889 435 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 NDUFAF7Q7L592 441 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 TMEM41AQ96HV5 264 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 LRRC61Q9BV99 259 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 LYRM4Q9HD34 91 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 SCP2D1Q9UJQ7 156 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 THSD7BQ9C0I4 1608 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 OR6C68A6NDL8 312 aa13.58□□□□□ -0.24
CUX1-215ENST00000556210 THBS1P07996 1170 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms