RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ZNF629Q9UEG4 869 aaPredicted RBP18.8■□□□□ 0.6
VPS29-206ENST00000549578 RRP15Q9Y3B9 282 aaKnown RBP18.8■□□□□ 0.6
VPS29-206ENST00000549578 IGFBP1P08833 259 aaPredicted RBP18.79■□□□□ 0.6
VPS29-206ENST00000549578 GSTM3P21266 225 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 CHRNB4P30926 498 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 RPL4P36578 427 aaKnown RBP18.79■□□□□ 0.6
VPS29-206ENST00000549578 SMSP52788 366 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 CTXN1P60606 82 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 SRSF1Q07955 248 aaKnown RBP eCLIP18.79■□□□□ 0.6
VPS29-206ENST00000549578 MELKQ14680 651 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 CASP12Q6UXS9 341 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 CD300LDQ6UXZ3 194 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 SLC35D2Q76EJ3 337 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 WDFY1Q8IWB7 410 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 RELL2Q8NC24 303 aaPredicted RBP18.79■□□□□ 0.6
VPS29-206ENST00000549578 SAMD8Q96LT4 415 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 EMC6Q9BV81 110 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 CDH10Q9Y6N8 788 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 A0A1W2PRG6 482 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 DVL2O14641 736 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 MRPL33O75394 65 aaKnown RBP18.79■□□□□ 0.6
VPS29-206ENST00000549578 SMNDC1O75940 238 aaKnown RBP eCLIP18.79■□□□□ 0.66e-11■■■■□ 20.7
VPS29-206ENST00000549578 AGFG2O95081 481 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 IL18BPO95998 194 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 TP53P04637 393 aaPredicted RBP18.79■□□□□ 0.6
VPS29-206ENST00000549578 SELENOPP49908 381 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 TOP3AQ13472 1001 aaPredicted RBP18.79■□□□□ 0.6
VPS29-206ENST00000549578 CDSNQ15517 529 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 AAED1Q7RTV5 226 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 MRGPRGQ86SM5 289 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 TMEM45BQ96B21 275 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 KATNB1Q9BVA0 655 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 PLA2G12AQ9BZM1 189 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 STX18Q9P2W9 335 aaKnown RBP18.79■□□□□ 0.6
VPS29-206ENST00000549578 REV1Q9UBZ9 1251 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 NKX1-2Q9UD57 310 aaPredicted RBP18.79■□□□□ 0.6
VPS29-206ENST00000549578 ADAM18Q9Y3Q7 739 aa18.79■□□□□ 0.6
VPS29-206ENST00000549578 ALPK2Q86TB3 2170 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 CGAP01215 116 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 BIDP55957 195 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 ERVK-25P63136 954 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 COX10Q12887 443 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 TAF11Q15544 211 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 ACKR1Q16570 336 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 RFX4Q33E94 735 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 NIPAL3Q6P499 406 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 OR8D4Q8NGM9 314 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 ITLN2Q8WWU7 325 aaPredicted RBP18.78■□□□□ 0.6
VPS29-206ENST00000549578 ASB5Q8WWX0 329 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 POLDIP3Q9BY77 421 aaKnown RBP18.78■□□□□ 0.6
VPS29-206ENST00000549578 OPN3Q9H1Y3 402 aaPredicted RBP18.78■□□□□ 0.6
VPS29-206ENST00000549578 PROCRQ9UNN8 238 aa18.78■□□□□ 0.6
VPS29-206ENST00000549578 FREM1Q5H8C1 2179 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 SLC35F4A4IF30 521 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 EEF1E1-BLOC1S5C9J1V9 151 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 EI24O14681 340 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 EEF1E1O43324 174 aaKnown RBP18.77■□□□□ 0.6
VPS29-206ENST00000549578 MITFO75030 526 aaPredicted RBP18.77■□□□□ 0.6
VPS29-206ENST00000549578 IGHV3-9P01782 118 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 RNF224P0DH78 156 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 PPP2R2BQ00005 443 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 SLC36A3Q495N2 470 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 CLEC12AQ5QGZ9 265 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 TFAP2EQ6VUC0 442 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 ZNF100Q8IYN0 542 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 CBR4Q8N4T8 237 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 EME1Q96AY2 570 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 APH1AQ96BI3 265 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 GPX7Q96SL4 187 aaPredicted RBP18.77■□□□□ 0.6
VPS29-206ENST00000549578 OSBPL10Q9BXB5 764 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 NDEL1Q9GZM8 345 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 TXNIPQ9H3M7 391 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 PAPOLBQ9NRJ5 636 aaKnown RBP18.77■□□□□ 0.6
VPS29-206ENST00000549578 KRT84Q9NSB2 600 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 IL20Q9NYY1 176 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 RCE1Q9Y256 329 aa18.77■□□□□ 0.6
VPS29-206ENST00000549578 USP9XQ93008 2570 aaPredicted RBP18.77■□□□□ 0.6
VPS29-206ENST00000549578 FAM90A27PA6NNH2 459 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 SOCS2O14508 198 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 ZNF432O94892 652 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 PPP1R3DO95685 299 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 BCL10O95999 233 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 CD14P08571 375 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 SLC6A6P31641 620 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 OR3A2P47893 321 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 DAP3P51398 398 aaKnown RBP18.76■□□□□ 0.59
VPS29-206ENST00000549578 TRIP10Q15642 601 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 CARD17Q5XLA6 110 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 KDM4DQ6B0I6 523 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 RPL13AP3Q6NVV1 102 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 LUZP2Q86TE4 346 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 CLDN22Q8N7P3 220 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 ZNF610Q8N9Z0 462 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 CA5BP1Q8WTZ4 195 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 ASB10Q8WXI3 467 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 TSPAN32Q96QS1 320 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 OR2M2Q96R28 347 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 C9orf16Q9BUW7 83 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 IFT27Q9BW83 186 aa18.76■□□□□ 0.59
VPS29-206ENST00000549578 RNPEPL1Q9HAU8 725 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms