RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 CMTM6Q9NX76 183 aa10.35□□□□□ -0.75
HDAC4-216ENST00000544989 CISD1Q9NZ45 108 aaKnown RBP10.35□□□□□ -0.75
HDAC4-216ENST00000544989 NPAP1Q9NZP6 1156 aa10.35□□□□□ -0.75
HDAC4-216ENST00000544989 STX18Q9P2W9 335 aaKnown RBP10.35□□□□□ -0.75
HDAC4-216ENST00000544989 LAMP3Q9UQV4 416 aa10.35□□□□□ -0.75
HDAC4-216ENST00000544989 ZNF99A8MXY4 864 aaPredicted RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 SHISA9B4DS77 424 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 CXCR6O00574 342 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 RNF13O43567 381 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 UPK3AO75631 287 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 DCTN3O75935 186 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 LYPD3O95274 346 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 CH25HO95992 272 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 MT-ND1P03886 318 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 IFNW1P05000 195 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 DANCRP0C864 163 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 BMP4P12644 408 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 CDH2P19022 906 aaPredicted RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 DRD4P21917 467 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 CBLP22681 906 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 SLC7A2P52569 658 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 SEC24CP53992 1094 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 FOXG1P55316 489 aaPredicted RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 LTBQ06643 244 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 ST3GAL3Q11203 375 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 FOXD4Q12950 439 aaPredicted RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 ZNF544Q6NX49 715 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 C8orf82Q6P1X6 216 aaPredicted RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 DTX2Q86UW9 622 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 C20orf196Q8IYI0 205 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 TMEM123Q8N131 208 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 FBXL14Q8N1E6 418 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 OR4D11Q8NGI4 311 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 LILRB1Q8NHL6 650 aaPredicted RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 GEMIN6Q8WXD5 167 aaKnown RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 BCL2L2Q92843 193 aaPredicted RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 PERPQ96FX8 193 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 TPD52L3Q96J77 140 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 PRRC1Q96M27 445 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 DHRS9Q9BPW9 319 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 KCTD14Q9BQ13 255 aaPredicted RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 DENND2DQ9H6A0 471 aaPredicted RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 BARX1Q9HBU1 254 aaPredicted RBP10.34□□□□□ -0.75
HDAC4-216ENST00000544989 CRLF2Q9HC73 371 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 GPR35Q9HC97 309 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 SPAG4Q9NPE6 437 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 NDE1Q9NXR1 346 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 SEC14L4Q9UDX3 406 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 RIMS3Q9UJD0 308 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 ARL2BPQ9Y2Y0 163 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 COL6A5A8TX70 2615 aa10.34□□□□□ -0.75
HDAC4-216ENST00000544989 PLCE1Q9P212 2302 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 SLC35F4A4IF30 521 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 CENPBD1B2RD01 187 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 OVOL3O00110 214 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 DYNC1I1O14576 645 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 HPRP00739 348 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 THY1P04216 161 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 ASAH2BP0C7U1 165 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 UMPSP11172 480 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 NR2C1P13056 603 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 MNAT1P51948 309 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 ATP5J2P56134 94 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 GNGT1P63211 74 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 HIKESHIQ53FT3 197 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 WDR88Q6ZMY6 472 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 CBLL1Q75N03 491 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 NANOGNBQ7Z5D8 188 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 YTHDF3Q7Z739 585 aaKnown RBP10.33□□□□□ -0.76
HDAC4-216ENST00000544989 CYP4Z1Q86W10 505 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 TREML1Q86YW5 311 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 WFDC11Q8NEX6 87 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 IL17RDQ8NFM7 739 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 OR6N1Q8NGY5 312 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 OR6X1Q8NH79 312 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 TMEM239Q8WW34 195 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 LIPHQ8WWY8 451 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 NANOS1Q8WY41 292 aaKnown RBP10.33□□□□□ -0.76
HDAC4-216ENST00000544989 SLC38A2Q96QD8 506 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 LRRC37BQ96QE4 947 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 KATNB1Q9BVA0 655 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 CRNNQ9UBG3 495 aaPredicted RBP10.33□□□□□ -0.76
HDAC4-216ENST00000544989 ABCD2Q9UBJ2 740 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 RPS6KA6Q9UK32 745 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 FBXO9Q9UK97 447 aaPredicted RBP10.33□□□□□ -0.76
HDAC4-216ENST00000544989 FBXL3Q9UKT7 428 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 POFUT2Q9Y2G5 429 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 MED31Q9Y3C7 131 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 JMJD1CQ15652 2540 aa10.33□□□□□ -0.76
HDAC4-216ENST00000544989 STAB1Q9NY15 2570 aa10.32□□□□□ -0.76
HDAC4-216ENST00000544989 USF3Q68DE3 2245 aa10.32□□□□□ -0.76
HDAC4-216ENST00000544989 A0A1W2PR80 420 aa10.32□□□□□ -0.76
HDAC4-216ENST00000544989 A0A1W2PRG6 482 aa10.32□□□□□ -0.76
HDAC4-216ENST00000544989 VSTM5A8MXK1 200 aa10.32□□□□□ -0.76
HDAC4-216ENST00000544989 KPNA4O00629 521 aaPredicted RBP10.32□□□□□ -0.76
HDAC4-216ENST00000544989 NME4O00746 187 aa10.32□□□□□ -0.76
HDAC4-216ENST00000544989 MGRN1O60291 552 aa10.32□□□□□ -0.76
HDAC4-216ENST00000544989 CRYAAP02489 173 aa10.32□□□□□ -0.76
HDAC4-216ENST00000544989 SOD3P08294 240 aa10.32□□□□□ -0.76
HDAC4-216ENST00000544989 TTKP33981 857 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms