RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NNATQ16517 81 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 TP53I3Q53FA7 332 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 FAM69AQ5T7M9 428 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 NKAIN2Q5VXU1 208 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 PTCRAQ6ISU1 281 aaPredicted RBP8.96□□□□□ -0.97
SS18-205ENST00000542420 APOOLQ6UXV4 268 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 SPATC1Q76KD6 591 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 TCTE3Q8IZS6 198 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 SLC25A45Q8N413 288 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 METTL27Q8N6F8 245 aaPredicted RBP8.96□□□□□ -0.97
SS18-205ENST00000542420 GRPEL2Q8TAA5 225 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 TRIM63Q969Q1 353 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 TBL1XR1Q9BZK7 514 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 FOXQ1Q9C009 403 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 VN1R1Q9GZP7 353 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 WDR76Q9H967 626 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 ACOXLQ9NUZ1 547 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 ADAM18Q9Y3Q7 739 aa8.96□□□□□ -0.97
SS18-205ENST00000542420 TRBV5-5A0A0J9YX44 114 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 A8MVM7 634 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 MEN1O00255 615 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 SSX4O60224 188 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 CPNE3O75131 537 aaKnown RBP8.96□□□□□ -0.98
SS18-205ENST00000542420 SLC25A12O75746 678 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 TSPAN9O75954 239 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 NCR1O76036 304 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 DXOO77932 396 aaKnown RBP8.96□□□□□ -0.98
SS18-205ENST00000542420 GYPBP06028 91 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 CALCBP10092 127 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 FOLR1P15328 257 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 CDKN2AP42771 156 aaKnown RBP8.96□□□□□ -0.98
SS18-205ENST00000542420 CSNK1EP49674 416 aaKnown RBP8.96□□□□□ -0.98
SS18-205ENST00000542420 LTBQ06643 244 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 ZP4Q12836 540 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 P2RY14Q15391 338 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 UBE2NLQ5JXB2 153 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 CBLN3Q6UW01 205 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 KANSL1Q7Z3B3 1105 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 DEFB119Q8N690 84 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 RASD2Q96D21 266 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 Q96M85 177 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 ADOQ96SZ5 270 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 SLITRK2Q9H156 845 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 PLEKHA1Q9HB21 404 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 B3GAT2Q9NPZ5 323 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 FGF21Q9NSA1 209 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 VSX1Q9NZR4 365 aaPredicted RBP8.96□□□□□ -0.98
SS18-205ENST00000542420 EMC3Q9P0I2 261 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 GNG8Q9UK08 70 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 COPS3Q9UNS2 423 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 ETV7Q9Y603 341 aa8.96□□□□□ -0.98
SS18-205ENST00000542420 FAM240BA0A1B0GVZ2 78 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 ANKUB1A6NFN9 424 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 CENPXA8MT69 81 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 ABHD16AO95870 558 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 RAB40ALP0C0E4 278 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 ICAM2P13598 275 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 BCKDHBP21953 392 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 AHCYP23526 432 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 ABCD3P28288 659 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 MSX1P28360 303 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 SLC6A1P30531 599 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 CCR9P51686 369 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 CSTF1Q05048 431 aaKnown RBP8.95□□□□□ -0.98
SS18-205ENST00000542420 RASGEF1BQ0VAM2 473 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 DYRK1AQ13627 763 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 KCNAB1Q14722 419 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 NR0B2Q15466 257 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 PXDC1Q5TGL8 231 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 LRRN1Q6UXK5 716 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 COX15Q7KZN9 410 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 ZNF321PQ8N8H1 164 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 SAMD12Q8N8I0 201 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 OR4M1Q8NGD0 313 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 OR4D9Q8NGE8 314 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 RAB40AQ8WXH6 277 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 MOGAT1Q96PD6 335 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 TSPAN32Q96QS1 320 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 LMF1Q96S06 567 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 FAM117AQ9C073 453 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 PPIL3Q9H2H8 161 aaKnown RBP8.95□□□□□ -0.98
SS18-205ENST00000542420 FANCFQ9NPI8 374 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 KLHL1Q9NR64 748 aa8.95□□□□□ -0.98
SS18-205ENST00000542420 PAQR5Q9NXK6 330 aaPredicted RBP8.95□□□□□ -0.98
SS18-205ENST00000542420 MRPL39Q9NYK5 338 aaKnown RBP8.95□□□□□ -0.98
SS18-205ENST00000542420 TMEM212A6NML5 194 aa8.94□□□□□ -0.98
SS18-205ENST00000542420 AIPO00170 330 aa8.94□□□□□ -0.98
SS18-205ENST00000542420 HCRTR2O43614 444 aa8.94□□□□□ -0.98
SS18-205ENST00000542420 SELENOFO60613 162 aa8.94□□□□□ -0.98
SS18-205ENST00000542420 LDOC1O95751 146 aaPredicted RBP8.94□□□□□ -0.98
SS18-205ENST00000542420 EIF4EP06730 217 aaKnown RBP8.94□□□□□ -0.98
SS18-205ENST00000542420 EPHA8P29322 1005 aaPredicted RBP8.94□□□□□ -0.98
SS18-205ENST00000542420 EVI2BP34910 448 aa8.94□□□□□ -0.98
SS18-205ENST00000542420 ACVR1BP36896 505 aa8.94□□□□□ -0.98
SS18-205ENST00000542420 CCR4P51679 360 aa8.94□□□□□ -0.98
SS18-205ENST00000542420 NR0B1P51843 470 aaKnown RBP8.94□□□□□ -0.98
SS18-205ENST00000542420 SRSF5Q13243 272 aaKnown RBP8.94□□□□□ -0.98
SS18-205ENST00000542420 ALKBH1Q13686 389 aaKnown RBP8.94□□□□□ -0.98
SS18-205ENST00000542420 INSL4Q14641 139 aa8.94□□□□□ -0.98
SS18-205ENST00000542420 SHBQ15464 509 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms