RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 CD84Q9UIB8 345 aa3□□□□□ -1.93
CD44-219ENST00000525685 EMCNQ9ULC0 261 aa3□□□□□ -1.93
CD44-219ENST00000525685 SNX12Q9UMY4 172 aa3□□□□□ -1.93
CD44-219ENST00000525685 RPL26L1Q9UNX3 145 aaKnown RBP3□□□□□ -1.93
CD44-219ENST00000525685 PPIL1Q9Y3C6 166 aa3□□□□□ -1.93
CD44-219ENST00000525685 ZNF175Q9Y473 711 aa3□□□□□ -1.93
CD44-219ENST00000525685 TEX264Q9Y6I9 313 aa3□□□□□ -1.93
CD44-219ENST00000525685 SPAG17Q6Q759 2223 aa3□□□□□ -1.93
CD44-219ENST00000525685 NCOR1O75376 2440 aa3□□□□□ -1.93
CD44-219ENST00000525685 BDP1A6H8Y1 2624 aa3□□□□□ -1.93
CD44-219ENST00000525685 ABCA7Q8IZY2 2146 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 COL5A1P20908 1838 aaPredicted RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 NPIPA5A0A0B4J1W7 369 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 EFCAB7A8K855 629 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 NPIPA5E9PKD4 350 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 C11orf98E9PRG8 122 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 PGRMC1O00264 195 aaKnown RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 DYNC1I1O14576 645 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 YKT6O15498 198 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 SDC3O75056 442 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 BCAS2O75934 225 aaPredicted RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 PDE5AO76074 875 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 KBTBD11O94819 623 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 AP2A1O95782 977 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 AGTP01019 485 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 IFNB1P01574 187 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 MT-ND3P03897 115 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 FGF1P05230 155 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 SFTPCP11686 197 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 ZNF24P17028 368 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 TCP1P17987 556 aaKnown RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 TEAD1P28347 426 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 RPL22P35268 128 aaKnown RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 RABIFP47224 123 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 SPINT3P49223 89 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 FNTAP49354 379 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 CCL11P51671 97 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 ATXN3P54252 364 aaPredicted RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 NAAAQ02083 359 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 OVGP1Q12889 678 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 MRPL28Q13084 256 aaKnown RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 MSLNQ13421 630 aaPredicted RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 FZD2Q14332 565 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 PRPSAP1Q14558 356 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 PPP1R3AQ16821 1122 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 PARP6Q2NL67 630 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 TIMM50Q3ZCQ8 353 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 ATAD3CQ5T2N8 411 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 WDR25Q64LD2 544 aaPredicted RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 TTC19Q6DKK2 380 aaPredicted RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 RAET1GQ6H3X3 334 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 Q6ZSR6 202 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 GLT6D1Q7Z4J2 308 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 YRDCQ86U90 279 aaKnown RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 PARGQ86W56 976 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 MARCH9Q86YJ5 346 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 NAXDQ8IW45 347 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 TRAM1L1Q8N609 369 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 DRAXINQ8NBI3 349 aaPredicted RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 GPR26Q8NDV2 337 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 DEFB124Q8NES8 71 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 TYMSOSQ8TAI1 123 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 ZPLD1Q8TCW7 415 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 BLOC1S5Q8TDH9 187 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 MAIP1Q8WWC4 291 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 PDXPQ96GD0 296 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 CAPZA3Q96KX2 299 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 PPP1R2P1Q96PQ5 205 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 NAPGQ99747 312 aaPredicted RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 TBL1YQ9BQ87 522 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 NLNQ9BYT8 704 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 SLC7A5P2Q9GIP4 190 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 TCEAL2Q9H3H9 227 aaPredicted RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 LRRC40Q9H9A6 602 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 ESM1Q9NQ30 184 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 SLC7A10Q9NS82 523 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 SPATA7Q9P0W8 599 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 KCNN3Q9UGI6 736 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 IL19Q9UHD0 177 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 NOSIPQ9Y314 301 aaKnown RBP2.99□□□□□ -1.93
CD44-219ENST00000525685 TRIOO75962 3097 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 DOCK9Q9BZ29 2069 aa2.99□□□□□ -1.93
CD44-219ENST00000525685 RALGAPA1Q6GYQ0 2036 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 PLXNB3Q9ULL4 1909 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 SPTY2D1-AS1A0A0U1RR47 76 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 LINC00854A0A1B0GVQ3 168 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 RGSL1A5PLK6 1076 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 CFAP73A6NFT4 308 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 SLC9B1P1A6NJY1 282 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 CCT8L1PA6NM43 557 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 M0QX08 132 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 CCL22O00626 93 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 ARPC1BO15143 372 aaKnown RBP2.98□□□□□ -1.93
CD44-219ENST00000525685 BCL2L11O43521 198 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 ZNF354AO60765 605 aaPredicted RBP2.98□□□□□ -1.93
CD44-219ENST00000525685 KRT14P02533 472 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 CSF2P04141 144 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 HOXC4P09017 264 aaPredicted RBP2.98□□□□□ -1.93
CD44-219ENST00000525685 GIMD1P0DJR0 217 aa2.98□□□□□ -1.93
CD44-219ENST00000525685 UMPSP11172 480 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms