RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 PSMG2Q969U7 264 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 PLIN2Q99541 437 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 SLC35A5Q9BS91 424 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 TSSK1BQ9BXA7 367 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 NEUROG2Q9H2A3 272 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 NANSQ9NR45 359 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.74□□□□□ -1.49
LSM1-202ENST00000520286 RMND1Q9NWS8 449 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 ZNF581Q9P0T4 197 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 RIMS3Q9UJD0 308 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 COMMD3-BMI1R4GMX3 469 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 MYO3BQ8WXR4 1341 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 CCL15-CCL14A0A0B4J2E2 113 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 B4DXG7 233 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 SGK1O00141 431 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 CIB2O75838 187 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 ATP5HO75947 161 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 PGK1P00558 417 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 AGTP01019 485 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 UQCRFS1P1P0C7P4 283 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 SLC2A3P11169 496 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 POLR2EP19388 210 aaKnown RBP5.73□□□□□ -1.49
LSM1-202ENST00000520286 HOXD10P28358 340 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 GCAP28676 217 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 PCK1P35558 622 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 XCR1P46094 333 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 EFNA3P52797 238 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 CDH4P55283 916 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 ZFP36L1Q07352 338 aaKnown RBP5.73□□□□□ -1.49
LSM1-202ENST00000520286 CUL2Q13617 745 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 SERTAD2Q14140 314 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 FCN2Q15485 313 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 CCL15Q16663 113 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 KRT71Q3SY84 523 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 NAXDQ8IW45 347 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 ACTRT1Q8TDG2 376 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 IFT81Q8WYA0 676 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 EFHD2Q96C19 240 aaPredicted RBP5.73□□□□□ -1.49
LSM1-202ENST00000520286 C10orf35Q96D05 121 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 COA1Q9GZY4 146 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 TMEM165Q9HC07 324 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 SPRR3Q9UBC9 169 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 ARL2BPQ9Y2Y0 163 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 PPIAL4AQ9Y536 164 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 BZW2Q9Y6E2 419 aaKnown RBP5.73□□□□□ -1.49
LSM1-202ENST00000520286 DOCK2Q92608 1830 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 ABCB11O95342 1321 aa5.73□□□□□ -1.49
LSM1-202ENST00000520286 ANKRD36CQ5JPF3 1778 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 RANBP2P49792 3224 aaKnown RBP5.72□□□□□ -1.49
LSM1-202ENST00000520286 HTTP42858 3142 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 COL6A3P12111 3177 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 ARAP2Q8WZ64 1704 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 LOC100131303A0A0U1RQF7 123 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 BTBD17A6NE02 478 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 NVLO15381 856 aaKnown RBP5.72□□□□□ -1.49
LSM1-202ENST00000520286 BIRC5O15392 142 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 LATO43561 262 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 PRKYO43930 277 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 E2F6O75461 281 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 GPX5O75715 221 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 DIRAS1O95057 198 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 SHBGP04278 402 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 SLC35E2P0CK97 266 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 VHLP40337 213 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 PRKXP51817 358 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 ATP1B3P54709 279 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 CCNA1P78396 465 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 MRPS11P82912 194 aaKnown RBP5.72□□□□□ -1.49
LSM1-202ENST00000520286 SSX2Q16385 188 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 TRIM16LQ309B1 348 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 GLYR1Q49A26 553 aaPredicted RBP5.72□□□□□ -1.49
LSM1-202ENST00000520286 CTSL3PQ5NE16 218 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 PRAMEF5Q5TYX0 476 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 PRAMEF6Q5VXH4 476 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 LIPNQ5VXI9 398 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 OR2A2Q6IF42 318 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 DHDDSQ86SQ9 333 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 OR1L4Q8NGR5 311 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 FAF2Q96CS3 445 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 MS4A14Q96JA4 679 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 CCDC42Q96M95 316 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 MTMR9Q96QG7 549 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 GFRA4Q9GZZ7 299 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 ZNF385DQ9H6B1 395 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 POPDC2Q9HBU9 364 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 MIEF1Q9NQG6 463 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 DPM3Q9P2X0 92 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 ANGPTL2Q9UKU9 493 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 PRPF19Q9UMS4 504 aaKnown RBP5.72□□□□□ -1.49
LSM1-202ENST00000520286 PDE10AQ9Y233 779 aa5.72□□□□□ -1.49
LSM1-202ENST00000520286 LAMB1P07942 1786 aa5.71□□□□□ -1.5
LSM1-202ENST00000520286 RBBP6Q7Z6E9 1792 aaKnown RBP5.71□□□□□ -1.5
LSM1-202ENST00000520286 GOLGA8OA6NCC3 632 aa5.71□□□□□ -1.5
LSM1-202ENST00000520286 FRG2CA6NGY1 282 aa5.71□□□□□ -1.5
LSM1-202ENST00000520286 ZNF716A6NP11 495 aa5.71□□□□□ -1.5
LSM1-202ENST00000520286 GOLGA8NF8WBI6 632 aa5.71□□□□□ -1.5
LSM1-202ENST00000520286 SULT2B1O00204 365 aa5.71□□□□□ -1.5
LSM1-202ENST00000520286 MED7O43513 233 aa5.71□□□□□ -1.5
LSM1-202ENST00000520286 KLRC4O43908 158 aa5.71□□□□□ -1.5
LSM1-202ENST00000520286 GNA14O95837 355 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms