RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 F5H6K3 240 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 RBFOX2O43251 390 aaKnown RBP eCLIP2.26□□□□□ -2.05
PTPN4-212ENST00000488896 BCAS1O75363 584 aaPredicted RBP2.26□□□□□ -2.05
PTPN4-212ENST00000488896 PNMTP11086 282 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 CCDC130P13994 396 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 NCBP2P52298 156 aaKnown RBP eCLIP2.26□□□□□ -2.05
PTPN4-212ENST00000488896 TNFRSF17Q02223 184 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 KLRC3Q07444 240 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 PLD1Q13393 1074 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 NCR3LG1Q68D85 454 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 PYHIN1Q6K0P9 492 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 CNIH2Q6PI25 160 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 LINC00173Q6ZV60 143 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 TRIM69Q86WT6 500 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 CCDC50Q8IVM0 306 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 RIMKLAQ8IXN7 391 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 C15orf56Q8N910 161 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 FNDC5Q8NAU1 212 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 CTNNBL1Q8WYA6 563 aaPredicted RBP2.26□□□□□ -2.05
PTPN4-212ENST00000488896 UFD1Q92890 307 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 GIN1Q9NXP7 522 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 XCL2Q9UBD3 114 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 TMCO1Q9UM00 188 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 MEMO1Q9Y316 297 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 U3KQV3 271 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 CABIN1Q9Y6J0 2220 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 BRWD3Q6RI45 1802 aa2.26□□□□□ -2.05
PTPN4-212ENST00000488896 A8MUI8 341 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 BTN3A3O00478 584 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 SOX6P35712 828 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 CASP4P49662 377 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 C1orf61Q13536 156 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 CDC37Q16543 378 aaPredicted RBP2.25□□□□□ -2.05
PTPN4-212ENST00000488896 DUSP7Q16829 419 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 DMRTC1Q5HYR2 192 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 C10orf120Q5SQS8 335 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 ZNF684Q5T5D7 378 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 CCDC80Q76M96 950 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 ZADH2Q8N4Q0 377 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 OR52H1Q8NGJ2 320 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 OR4D5Q8NGN0 318 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 GEMIN6Q8WXD5 167 aaKnown RBP2.25□□□□□ -2.05
PTPN4-212ENST00000488896 ESR2Q92731 530 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 FGF14Q92915 247 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 EFHD2Q96C19 240 aaPredicted RBP2.25□□□□□ -2.05
PTPN4-212ENST00000488896 OXGR1Q96P68 337 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 GPA33Q99795 319 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 OMDQ99983 421 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 PCSK1NQ9UHG2 260 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 ODF2LQ9ULJ1 636 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 FRMPD3Q5JV73 1810 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 DOCK9Q9BZ29 2069 aa2.25□□□□□ -2.05
PTPN4-212ENST00000488896 PIKFYVEQ9Y2I7 2098 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 CLDN3O15551 220 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 RRP8O43159 456 aaKnown RBP2.24□□□□□ -2.05
PTPN4-212ENST00000488896 MFN2O95140 757 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 DIRAS3O95661 229 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 IL12AP29459 219 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 CA8P35219 290 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 CYB561P49447 251 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 KRTAP12-3P60328 96 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 SLC7A9P82251 487 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 SYCNQ0VAF6 134 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 ZNF573Q86YE8 665 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 LINC00304Q8N9R0 145 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 VN1R2Q8NFZ6 395 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 RGP1Q92546 391 aaPredicted RBP2.24□□□□□ -2.05
PTPN4-212ENST00000488896 GABARAPL3Q9BY60 117 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 NHEJ1Q9H9Q4 299 aaPredicted RBP2.24□□□□□ -2.05
PTPN4-212ENST00000488896 YEATS2Q9ULM3 1422 aa2.24□□□□□ -2.05
PTPN4-212ENST00000488896 GPR179Q6PRD1 2367 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 FANCIQ9NVI1 1328 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 K7EM74 188 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 POLR2DO15514 142 aaKnown RBP2.23□□□□□ -2.05
PTPN4-212ENST00000488896 LINC00869P0C866 280 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 POLR2MP0CAP2 368 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 NCF1P14598 390 aaPredicted RBP2.23□□□□□ -2.05
PTPN4-212ENST00000488896 AQP6Q13520 282 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 INAQ16352 499 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 TATDN3Q17R31 274 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 HES5Q5TA89 166 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 H2AFVQ71UI9 128 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 PLA2G4DQ86XP0 818 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 OR10T2Q8NGX3 314 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 RPP21Q9H633 154 aaKnown RBP2.23□□□□□ -2.05
PTPN4-212ENST00000488896 RAB18Q9NP72 206 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 ZNRD1Q9P1U0 126 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 ACTR3BQ9P1U1 418 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 CHRNA9Q9UGM1 479 aa2.23□□□□□ -2.05
PTPN4-212ENST00000488896 IGLV3-12A0A075B6K2 115 aa2.22□□□□□ -2.05
PTPN4-212ENST00000488896 KMOO15229 486 aa2.22□□□□□ -2.05
PTPN4-212ENST00000488896 DIRAS1O95057 198 aa2.22□□□□□ -2.05
PTPN4-212ENST00000488896 PAX7P23759 505 aa2.22□□□□□ -2.05
PTPN4-212ENST00000488896 GNA11P29992 359 aa2.22□□□□□ -2.05
PTPN4-212ENST00000488896 QARSP47897 775 aaKnown RBP2.22□□□□□ -2.05
PTPN4-212ENST00000488896 SELPLGQ14242 412 aa2.22□□□□□ -2.05
PTPN4-212ENST00000488896 STRADAQ7RTN6 431 aa2.22□□□□□ -2.05
PTPN4-212ENST00000488896 BIVMQ86UB2 503 aa2.22□□□□□ -2.05
PTPN4-212ENST00000488896 LGI3Q8N145 548 aa2.22□□□□□ -2.05
PTPN4-212ENST00000488896 OSR2Q8N2R0 312 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms