RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 DVL3Q92997 716 aaPredicted RBP13.11□□□□□ -0.31
MCF2L-228ENST00000487354 ZNF587Q96SQ5 575 aaPredicted RBP13.11□□□□□ -0.31
MCF2L-228ENST00000487354 C20orf27Q9GZN8 174 aa13.11□□□□□ -0.31
MCF2L-228ENST00000487354 ZNF385DQ9H6B1 395 aa13.11□□□□□ -0.31
MCF2L-228ENST00000487354 PRDM4Q9UKN5 801 aa13.11□□□□□ -0.31
MCF2L-228ENST00000487354 M0R3G1 203 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 MPZL1O95297 269 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 ALDOCP09972 364 aaKnown RBP13.1□□□□□ -0.31
MCF2L-228ENST00000487354 HLA-DOBP13765 273 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 TXNL4AP83876 142 aaKnown RBP13.1□□□□□ -0.31
MCF2L-228ENST00000487354 HOXC5Q00444 222 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 PIGFQ07326 219 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 DPY19L1Q2PZI1 675 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 AVPI1Q5T686 147 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 ATG16L1Q676U5 607 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 C6orf89Q6UWU4 347 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 PIK3C3Q8NEB9 887 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 VPS37AQ8NEZ2 397 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 FGFBP3Q8TAT2 258 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 TAAR8Q969N4 342 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 C1orf147Q96MC9 270 aaPredicted RBP13.1□□□□□ -0.31
MCF2L-228ENST00000487354 TSPAN32Q96QS1 320 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 ZNF416Q9BWM5 594 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 C1QTNF5Q9BXJ0 243 aa13.1□□□□□ -0.31
MCF2L-228ENST00000487354 A0A0G2JMP0 313 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 A0A0X1KG70 313 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 LOC102725191A0A1B0GVB3 256 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 MS4A18H0YCH9 400 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 IGHV2-5P01817 119 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 CD79AP11912 226 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 B4GALT1P15291 398 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 GRPRP30550 384 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 S100A3P33764 101 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 GIPRP48546 466 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 CLNS1AP54105 237 aaKnown RBP13.09□□□□□ -0.31
MCF2L-228ENST00000487354 AQP5P55064 265 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 COPZ1P61923 177 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 UFM1P61960 85 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 MS4A18Q3C1V0 323 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 ALKBH6Q3KRA9 238 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 REP15Q6BDI9 236 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 ACSM5Q6NUN0 579 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 COMTD1Q86VU5 262 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 LRRC34Q8IZ02 419 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 PAQR4Q8N4S7 273 aaPredicted RBP13.09□□□□□ -0.31
MCF2L-228ENST00000487354 OR4M2Q8NGB6 313 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 SLC38A5Q8WUX1 472 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 C22orf15Q8WYQ4 148 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 GTF3AQ92664 365 aaKnown RBP13.09□□□□□ -0.31
MCF2L-228ENST00000487354 LRRC58Q96CX6 371 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 PANX1Q96RD7 426 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 SORT1Q99523 831 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 SLC52A3Q9NQ40 469 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 PPIAL4AQ9Y536 164 aa13.09□□□□□ -0.31
MCF2L-228ENST00000487354 J3QLI3 93 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 AIM2O14862 343 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 ZNF500O60304 480 aaPredicted RBP13.08□□□□□ -0.32
MCF2L-228ENST00000487354 CDC14BO60729 498 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 PRSS23O95084 383 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 CLPTM1O96005 669 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 BCHEP06276 602 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 ETFAP13804 333 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 PTDSS1P48651 473 aaKnown RBP13.08□□□□□ -0.32
MCF2L-228ENST00000487354 NME5P56597 212 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 MVKQ03426 396 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 ZP4Q12836 540 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 MFSD13AQ14CX5 517 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 TRMT5Q32P41 509 aaKnown RBP13.08□□□□□ -0.32
MCF2L-228ENST00000487354 ZNF311Q5JNZ3 666 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 CARD17Q5XLA6 110 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 TREML4Q6UXN2 200 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 ZNF813Q6ZN06 617 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 TEX29Q8N6K0 151 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 ADPRHL1Q8NDY3 354 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 SLC41A3Q96GZ6 507 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 PKNOX2Q96KN3 472 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 EMC6Q9BV81 110 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 SPATA9Q9BWV2 254 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 KLHL14Q9P2G3 628 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 P2RX2Q9UBL9 471 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 LGALS13Q9UHV8 139 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 CORINQ9Y5Q5 1042 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 CACNG2Q9Y698 323 aa13.08□□□□□ -0.32
MCF2L-228ENST00000487354 IGLV3-9A0A075B6K5 115 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 C17orf100A8MU93 164 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 TYROBPO43914 113 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 PATE4P0C8F1 98 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 NCF2P19878 526 aaPredicted RBP13.07□□□□□ -0.32
MCF2L-228ENST00000487354 HTR2AP28223 471 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 ERVS71-1P61550 626 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 RPS23P62266 143 aaKnown RBP13.07□□□□□ -0.32
MCF2L-228ENST00000487354 CCL8P80075 99 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 C1DQ13901 141 aaKnown RBP13.07□□□□□ -0.32
MCF2L-228ENST00000487354 RAB39AQ14964 217 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 FAM69AQ5T7M9 428 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 OGFOD2Q6N063 350 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 BPIFB2Q8N4F0 458 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 TRIML2Q8N7C3 387 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 NANPQ8TBE9 248 aa13.07□□□□□ -0.32
MCF2L-228ENST00000487354 TXNDC15Q96J42 360 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms