RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CD97P48960 835 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 RPS7P62081 194 aaKnown RBP12.77□□□□□ -0.37
CUX1-209ENST00000487284 POU4F2Q12837 409 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 GGTLC2Q14390 218 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 MFSD13AQ14CX5 517 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 SSX1Q16384 188 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 B3GLCTQ6Y288 498 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 ATCAYQ86WG3 371 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 ACBD7Q8N6N7 88 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 SCAIQ8N9R8 606 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 OR52N1Q8NH53 320 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 RPL3LQ92901 407 aaKnown RBP12.77□□□□□ -0.37
CUX1-209ENST00000487284 ZBTB8AQ96BR9 441 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 DDIT4LQ96D03 193 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 TMEM41AQ96HV5 264 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 NMNAT3Q96T66 252 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 ASPNQ9BXN1 380 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.77□□□□□ -0.37
CUX1-209ENST00000487284 ADGRL4Q9HBW9 690 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 ISYNA1Q9NPH2 558 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 SEC14L4Q9UDX3 406 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 CORINQ9Y5Q5 1042 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 ITPR1Q14643 2758 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 PKD1L2Q7Z442 2459 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 AHCYL1O43865 530 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 AIREO43918 545 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 SNX4O95219 450 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 IGHMP01871 453 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 PDGFAP04085 211 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 GYPBP06028 91 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 SBK2P0C263 348 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 IL11P20809 199 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 IDUAP35475 653 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 TNFSF10P50591 281 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 SLC25A1P53007 311 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 LGALS3BPQ08380 585 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 KRR1Q13601 381 aaKnown RBP12.76□□□□□ -0.37
CUX1-209ENST00000487284 SLC35D3Q5M8T2 416 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 OR2G6Q5TZ20 316 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 LCN1P1Q5VSP4 162 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 SLC6A19Q695T7 634 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 C3orf33Q6P1S2 294 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 EXD3Q8N9H8 876 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 ZNF417Q8TAU3 575 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 ZPLD1Q8TCW7 415 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 DNAJA3Q96EY1 480 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 ARL5BQ96KC2 179 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 TSPAN32Q96QS1 320 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 ZNF587Q96SQ5 575 aaPredicted RBP12.76□□□□□ -0.37
CUX1-209ENST00000487284 INPP5EQ9NRR6 644 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 SERINC1Q9NRX5 453 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 INIPQ9NRY2 104 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 GRHPRQ9UBQ7 328 aa12.76□□□□□ -0.37
CUX1-209ENST00000487284 SPIN1Q9Y657 262 aaPredicted RBP12.76□□□□□ -0.37
CUX1-209ENST00000487284 PINLYPA6NC86 204 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 C12orf71A8MTZ7 269 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 SHISA8B8ZZ34 492 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 MKRN2OSH3BPM6 223 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 K7EM74 188 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 PLPP3O14495 311 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 TRIM3O75382 744 aaPredicted RBP12.75□□□□□ -0.37
CUX1-209ENST00000487284 SP1P08047 785 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 CD46P15529 392 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 SPI1P17947 270 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 CDKN2AP42771 156 aaKnown RBP12.75□□□□□ -0.37
CUX1-209ENST00000487284 SLC16A1P53985 500 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 NCS1P62166 190 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 DBPQ10586 325 aaPredicted RBP12.75□□□□□ -0.37
CUX1-209ENST00000487284 ZP4Q12836 540 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.75□□□□□ -0.37
CUX1-209ENST00000487284 MESTQ5EB52 335 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 TIGD3Q6B0B8 471 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 SLC25A25Q6KCM7 469 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 LEG1Q6P5S2 330 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 GALNTL5Q7Z4T8 443 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 LHFPL3Q86UP9 236 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 JAZF1Q86VZ6 243 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 KLHL36Q8N4N3 616 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 TMEM99Q8N816 258 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 POMGNT2Q8NAT1 580 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 SLC25A43Q8WUT9 341 aaPredicted RBP12.75□□□□□ -0.37
CUX1-209ENST00000487284 TM9SF4Q92544 642 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 JSRP1Q96MG2 331 aaPredicted RBP12.75□□□□□ -0.37
CUX1-209ENST00000487284 ARHGAP9Q9BRR9 750 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 ASB6Q9NWX5 421 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 NDUFB11Q9NX14 153 aa12.75□□□□□ -0.37
CUX1-209ENST00000487284 LIPT2A6NK58 231 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 NME2P1O60361 137 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 BCL10O95999 233 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 IMPDH2P12268 514 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 CPEP16870 476 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 ZNF182P17025 639 aaPredicted RBP12.74□□□□□ -0.37
CUX1-209ENST00000487284 CNR1P21554 472 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 NME2P22392 152 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 FKBP2P26885 142 aaKnown RBP12.74□□□□□ -0.37
CUX1-209ENST00000487284 CD79BP40259 229 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 PEX19P40855 299 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 DIO1P49895 249 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 VBP1P61758 197 aa12.74□□□□□ -0.37
CUX1-209ENST00000487284 ACTC1P68032 377 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms