RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 ZNF248Q8NDW4 579 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 RNASE11Q8TAA1 199 aaKnown RBP4.58□□□□□ -1.68
CCDC39-204ENST00000476379 PAQR8Q8TEZ7 354 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 TRMT2BQ96GJ1 504 aaKnown RBP4.58□□□□□ -1.68
CCDC39-204ENST00000476379 OR1F2PQ96R84 312 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 SDF2Q99470 211 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 ZFYVE21Q9BQ24 234 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 SUCNR1Q9BXA5 334 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 MTHFD2LQ9H903 347 aaPredicted RBP4.58□□□□□ -1.68
CCDC39-204ENST00000476379 NDUFB11Q9NX14 153 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 ZSCAN32Q9NX65 697 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 KLHL21Q9UJP4 597 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 DIMT1Q9UNQ2 313 aaKnown RBP4.58□□□□□ -1.68
CCDC39-204ENST00000476379 MRPS33Q9Y291 106 aaKnown RBP4.58□□□□□ -1.68
CCDC39-204ENST00000476379 DTX4Q9Y2E6 619 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 SIT1Q9Y3P8 196 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 NBEAQ8NFP9 2946 aa4.58□□□□□ -1.68
CCDC39-204ENST00000476379 CREBBPQ92793 2442 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 A0A0B4J293 547 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 A0A0G2JPF8 293 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 SLC22A31A6NKX4 558 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 HNRNPCL3B7ZW38 293 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 ATP6V1G2-DDX39BF2Z307 99 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 EIF3FO00303 357 aaPredicted RBP4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MAN2B1O00754 1011 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 ITGA10O75578 1167 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 KRT33AO76009 404 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 F12P00748 615 aaPredicted RBP4.57□□□□□ -1.68
CCDC39-204ENST00000476379 IFNA7P01567 189 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 PRH1P02810 166 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 HOXB5P09067 269 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 HNRNPCL4P0DMR1 293 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 RNH1P13489 461 aaKnown RBP4.57□□□□□ -1.68
CCDC39-204ENST00000476379 GABRB1P18505 474 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 POU3F4P49335 361 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 FAM53BQ14153 422 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 SGCAQ16586 387 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 FAM209AQ5JX71 171 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 SLC48A1Q6P1K1 146 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 WDR88Q6ZMY6 472 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 UBE3DQ7Z6J8 389 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 CMTM4Q8IZR5 234 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 BEST3Q8N1M1 668 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 OR4C15Q8NGM1 316 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 OR13C9Q8NGT0 318 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 OR5AK2Q8NH90 309 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 C8orf44Q96CB5 159 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 ITPKCQ96DU7 683 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MRGPRX3Q96LB0 322 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 SFXN2Q96NB2 322 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MS4A4EQ96PG1 132 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 PITX2Q99697 317 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MESP1Q9BRJ9 268 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 PCBD2Q9H0N5 130 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 BANF2Q9H503 90 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 CNOT2Q9NZN8 540 aaKnown RBP4.57□□□□□ -1.68
CCDC39-204ENST00000476379 PRODH2Q9UF12 536 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 PTPN13Q12923 2485 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 TMEM235A6NFC5 223 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MASP2O00187 686 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 VEGFDO43915 354 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 UGDHO60701 494 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 RFPL3O75679 317 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MPIG6BO95866 241 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 PRKACAP17612 351 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 IGFALSP35858 605 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 ASCL1P50553 236 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 ARFIP1P53367 373 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 LIPNQ5VXI9 398 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 FCRL6Q6DN72 434 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 OR52W1Q6IF63 320 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MRM1Q6IN84 353 aaKnown RBP4.57□□□□□ -1.68
CCDC39-204ENST00000476379 ULK3Q6PHR2 472 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 BRICD5Q6PL45 260 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 ZNF620Q6ZNG0 422 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 Q6ZTK2 550 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 SLITRK4Q8IW52 837 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 LRRC18Q8N456 261 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 PRR18Q8N4B5 295 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 SLC22A8Q8TCC7 542 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 SLC37A2Q8TED4 501 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 SENP5Q96HI0 755 aaPredicted RBP4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MRGPRX1Q96LB2 322 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 HYLS1Q96M11 299 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MFFQ9GZY8 342 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 HRH4Q9H3N8 390 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 ELOVL3Q9HB03 270 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MCCC2Q9HCC0 563 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 FAM60AQ9NP50 221 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 MED29Q9NX70 200 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 GLTPQ9NZD2 209 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 CKLFQ9UBR5 152 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 PCDHGB2Q9Y5G2 931 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 B3GALT1Q9Y5Z6 326 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 A0A0B4J2A0 478 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 SDCBPO00560 298 aaPredicted RBP4.57□□□□□ -1.68
CCDC39-204ENST00000476379 NPC1O15118 1278 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 CREBL2O60519 120 aaPredicted RBP4.57□□□□□ -1.68
CCDC39-204ENST00000476379 EFEMP2O95967 443 aa4.57□□□□□ -1.68
CCDC39-204ENST00000476379 CFDP00746 253 aaPredicted RBP4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms