RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 OR5K3A6NET4 321 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 BLOC1S5-TXNDC5H3BN57 136 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 CCRL2O00421 344 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 KPNA3O00505 521 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 TNFSF11O14788 317 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 PPP1R2P9O14990 202 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 NUPL2O15504 423 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 BUB3O43684 328 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 KIAA0513O60268 411 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 CST8O60676 142 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 SRPX2O60687 465 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 CEACAM4O75871 244 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 GLSO94925 669 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 GJB5O95377 273 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 UTS2O95399 124 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 TSPAN13O95857 204 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 RAF1P04049 648 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 SERPINB2P05120 415 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 KLK1P06870 262 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 HAPLN1P10915 354 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ADRB3P13945 408 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 MYOGP15173 224 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 UCHL3P15374 230 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 KCNE1P15382 129 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 EPHA2P29317 976 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 NUDT1P36639 197 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 MAGEA12P43365 314 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 P2RY1P47900 373 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 GSSP48637 474 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ACOT2P49753 483 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 TMED10P49755 219 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 IDH3GP51553 393 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 DLX5P56178 289 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 MAZP56270 477 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 FAM3AP98173 230 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 PAX2Q02962 417 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 UBE2V1Q13404 147 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 KRR1Q13601 381 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 CTTNQ14247 550 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 PTGES3Q15185 160 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 SPHARQ15513 63 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 POU2AF1Q16633 256 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 PLK5Q496M5 336 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 GPR33Q49SQ1 333 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ESCO2Q56NI9 601 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 SYT14P1Q58G82 188 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ARMCX4Q5H9R4 360 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 SPIN3Q5JUX0 258 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 RBM48Q5RL73 367 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 PDSS1Q5T2R2 415 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 RESP18Q5W5W9 173 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 CES5AQ6NT32 575 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF544Q6NX49 715 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 CDC42EP5Q6NZY7 148 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 BTNL3Q6UXE8 466 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 CEACAM20Q6UY09 585 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 HACD2Q6Y1H2 254 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 Q6ZSR3 168 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 LINC00336Q6ZUF6 198 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 STOX1Q6ZVD7 989 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF534Q76KX8 674 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 SSX7Q7RTT5 188 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 TRMT1LQ7Z2T5 733 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 UNC93AQ86WB7 457 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 TMEM17Q86X19 198 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 TRAPPC5Q8IUR0 188 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 LACC1Q8IV20 430 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 UBL4BQ8N7F7 174 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 Q8N9G6 341 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 NPEPL1Q8NDH3 523 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 OR4K2Q8NGD2 314 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 OR2Y1Q8NGV0 311 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 TMEM255BQ8WV15 326 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 RASSF5Q8WWW0 418 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 RORBQ92753 470 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ANKRD9Q96BM1 317 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 YIPF6Q96EC8 236 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 RILPQ96NA2 401 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 SERPINB12Q96P63 405 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 GFM1Q96RP9 751 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 RAB11FIP5Q9BXF6 653 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ESRP2Q9H6T0 727 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF430Q9H8G1 570 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 HINT3Q9NQE9 182 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 GIN1Q9NXP7 522 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 KLHL21Q9UJP4 597 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF221Q9UK13 617 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 WDR83OSQ9Y284 106 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 HEY1Q9Y5J3 304 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 NUBP2Q9Y5Y2 271 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 CCDC7Q96M83 1385 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 MST1RQ04912 1400 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 PTPRUQ92729 1446 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF532Q9HCE3 1301 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 NID2Q14112 1375 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 TRAV18A0A075B6X5 111 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 TEX13DA0A0J9YY54 714 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 A0A1W2PRF3 423 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 A0A1W2PRM7 423 aa4.2□□□□□ -1.74
CCDC88A-210ENST00000468534 ANTXRLA6NF34 631 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms