RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 C10orf67Q8IYJ2 551 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 GPR137CQ8N3F9 429 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 ACBD4Q8NC06 268 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 FAM222BQ8WU58 562 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 MED18Q9BUE0 208 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 LINC00470Q9BZP3 86 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 ZNF226Q9NYT6 803 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 TAS2R16Q9NYV7 291 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 SAMHD1Q9Y3Z3 626 aaKnown RBP17.5■□□□□ 0.39
COL9A3-204ENST00000463487 LYVE1Q9Y5Y7 322 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 PTPN13Q12923 2485 aa17.5■□□□□ 0.39
COL9A3-204ENST00000463487 NPIPB13A6NJU9 1138 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 NPIPB4C9JG80 1138 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 ZNF587BE7ETH6 402 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 CASKO14936 926 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 CCNB2O95067 398 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 BCL10O95999 233 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 IFNGR1P15260 489 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 FUT4P22083 530 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 DNAJA1P31689 397 aaKnown RBP17.49■□□□□ 0.39
COL9A3-204ENST00000463487 AQP2P41181 271 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 SELENOPP49908 381 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 SEC23BQ15437 767 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 ZBED5Q49AG3 693 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 SFRP5Q5T4F7 317 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 TSPO2Q5TGU0 170 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 OR51A7Q8NH64 312 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 DACH2Q96NX9 599 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 FUZQ9BT04 418 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 SLC7A10Q9NS82 523 aa17.49■□□□□ 0.39
COL9A3-204ENST00000463487 CCM2LQ9NUG4 571 aaPredicted RBP17.49■□□□□ 0.39
COL9A3-204ENST00000463487 CIB4A0PJX0 185 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 SH3D21A4FU49 640 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 CLOCKO15516 846 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 FKBP6O75344 327 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 TSPAN19P0C672 248 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 HLA-DOBP13765 273 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 COX5AP20674 150 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 NTF4P34130 210 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 RPL4P36578 427 aaKnown RBP17.48■□□□□ 0.39
COL9A3-204ENST00000463487 OMPP47874 163 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 ARHGDIAP52565 204 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 RPS4XP62701 263 aaKnown RBP17.48■□□□□ 0.39
COL9A3-204ENST00000463487 LSM11P83369 360 aaKnown RBP eCLIP17.48■□□□□ 0.391e-7■■□□□ 12.7
COL9A3-204ENST00000463487 OR7E24Q6IFN5 339 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 HMBOX1Q6NT76 420 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 BHLHA15Q7RTS1 189 aaPredicted RBP17.48■□□□□ 0.39
COL9A3-204ENST00000463487 PAPD5Q8NDF8 572 aaKnown RBP17.48■□□□□ 0.39
COL9A3-204ENST00000463487 OR13C2Q8NGS9 318 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 OR6N1Q8NGY5 312 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 OR6X1Q8NH79 312 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 LRR1Q96L50 414 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 OR2M2Q96R28 347 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 ACTR6Q9GZN1 396 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 MED29Q9NX70 200 aa17.48■□□□□ 0.39
COL9A3-204ENST00000463487 TRAV27A0A087WT01 109 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 SLC35F4A4IF30 521 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 UNC119BA6NIH7 251 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 DEAF1O75398 565 aaPredicted RBP17.47■□□□□ 0.39
COL9A3-204ENST00000463487 E2F6O75461 281 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 LYZL6O75951 148 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 GOSR1O95249 250 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 F13BP05160 661 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 FCGR1AP12314 374 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 NR2C1P13056 603 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 FPR3P25089 353 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 MPGP29372 298 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 HOXC12P31275 282 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 LIMS1P48059 325 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 ERFP50548 548 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 SH3BGRP55822 239 aaPredicted RBP17.47■□□□□ 0.39
COL9A3-204ENST00000463487 BIDP55957 195 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 FAM205BPQ63HN1 556 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 P2RY8Q86VZ1 359 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 GNPDA2Q8TDQ7 276 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 ZNF566Q969W8 418 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 MARVELD3Q96A59 401 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 DNAJB9Q9UBS3 223 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 U3KQV3 271 aa17.47■□□□□ 0.39
COL9A3-204ENST00000463487 CDC42EP2O14613 210 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 ZNF432O94892 652 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 NDUFB2O95178 105 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 IGHG1P01857 330 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 EPXP11678 715 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 IGHV1-2P23083 117 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 EDNRAP25101 427 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 CSNK1A1P48729 337 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 CAMK2DQ13557 499 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 LAPTM4AQ15012 233 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 MICAQ29983 383 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 C1QTNF12Q5T7M4 302 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 CARD17Q5XLA6 110 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 MEX3DQ86XN8 651 aaKnown RBP17.46■□□□□ 0.39
COL9A3-204ENST00000463487 TMEM123Q8N131 208 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 ZNF433Q8N7K0 673 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-204ENST00000463487 C1orf162Q8NEQ5 155 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-204ENST00000463487 MOSPD2Q8NHP6 518 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 LINC01560Q8TB33 94 aa17.46■□□□□ 0.39
COL9A3-204ENST00000463487 SLC25A44Q96H78 314 aaPredicted RBP17.46■□□□□ 0.39
COL9A3-204ENST00000463487 ALKBH3Q96Q83 286 aaPredicted RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms