RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ICOSLGO75144 302 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ALOX12BO75342 701 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 RPN2P04844 631 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 PCCBP05166 539 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 H2AFB1P0C5Y9 115 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 OR4E1P0C645 316 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ST6GAL1P15907 406 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 RPL4P36578 427 aaKnown RBP10.7□□□□□ -0.7
CPSF3-202ENST00000460593 SNTB1Q13884 538 aaKnown RBP10.7□□□□□ -0.7
CPSF3-202ENST00000460593 UNQ9370/PRO34162Q6UXP9 181 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 RHOUQ7L0Q8 258 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 SVBPQ8N300 66 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 GALNT16Q8N428 558 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 OR5K2Q8NHB8 316 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 SFXN5Q8TD22 340 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF681Q96N22 645 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 MTHFD2LQ9H903 347 aaPredicted RBP10.7□□□□□ -0.7
CPSF3-202ENST00000460593 PRSS16Q9NQE7 514 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 NIT2Q9NQR4 276 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 GSN-AS1Q9NRJ2 163 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 FLRT3Q9NZU0 649 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 TSPAN11A1L157 253 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 RNF222A6NCQ9 220 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 H7C417 338 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 DOK2O60496 412 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 RPLP2P05387 115 aaKnown RBP10.69□□□□□ -0.7
CPSF3-202ENST00000460593 ANXA2P07355 339 aaKnown RBP10.69□□□□□ -0.7
CPSF3-202ENST00000460593 CAPZA1P52907 286 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 NKPD1Q17RQ9 610 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 NKAIN2Q5VXU1 208 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 OR1M1Q8NGA1 313 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 ZCCHC10Q8TBK6 192 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 MTFP1Q9UDX5 166 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF281Q9Y2X9 895 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 TMEM72A0PK05 275 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 GPANK1O95872 356 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 PNLIPRP2P54317 469 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 FHL1Q13642 323 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 SFTPA1Q8IWL2 248 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 OR2A1Q8NGT9 310 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 RNF166Q96A37 237 aaPredicted RBP10.69□□□□□ -0.7
CPSF3-202ENST00000460593 ARRDC3Q96B67 414 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 FOXN4Q96NZ1 517 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 DPEP2Q9H4A9 486 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 CALML5Q9NZT1 146 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 KCNK6Q9Y257 313 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 NOP16Q9Y3C1 178 aaKnown RBP10.69□□□□□ -0.7
CPSF3-202ENST00000460593 TBC1D3EA0A087X179 549 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 GXYLT2A0PJZ3 443 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 TVP23AA6NH52 213 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 H7C1C5 153 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 CCL16O15467 120 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 OR2T7P0C7T2 308 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF28P17035 718 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 LCN6P62502 163 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 EXOSC7Q15024 291 aaKnown RBP10.69□□□□□ -0.7
CPSF3-202ENST00000460593 LURAP1LQ8IV03 231 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 OR6N1Q8NGY5 312 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 OR2T27Q8NH04 317 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 PPP1R1CQ8WVI7 109 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 SPHK1Q9NYA1 384 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 LRRK1Q38SD2 2015 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 KNL1Q8NG31 2342 aa10.69□□□□□ -0.7
CPSF3-202ENST00000460593 OR2AT4A6NND4 320 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 AGPAT2O15120 278 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 ITGA10O75578 1167 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 AVPR2P30518 371 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 AQP2P41181 271 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 MECP2P51608 486 aaKnown RBP10.68□□□□□ -0.7
CPSF3-202ENST00000460593 KRT33BQ14525 404 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 PON3Q15166 354 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 MLF2Q15773 248 aaPredicted RBP10.68□□□□□ -0.7
CPSF3-202ENST00000460593 KRT77Q7Z794 578 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 SLC22A8Q8TCC7 542 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF629Q9UEG4 869 aaPredicted RBP10.68□□□□□ -0.7
CPSF3-202ENST00000460593 A0A1W2PPE3 182 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 EEF1E1-BLOC1S5C9J1V9 151 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 LDB3O75112 727 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 CLEC3AO75596 197 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 ACTA2P62736 377 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 ACTG2P63267 376 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 GLT8D1Q68CQ7 371 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 STEAP1BQ6NZ63 245 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF600Q6ZNG1 722 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 TMPPEQ6ZT21 453 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 TMPRSS11FQ6ZWK6 438 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 OR10R2Q8NGX6 335 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 PHOSPHO1Q8TCT1 267 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 NR4A3Q92570 626 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 IRF7Q92985 503 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 PPP1R14AQ96A00 147 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 MYADMQ96S97 322 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 ADAM29Q9UKF5 820 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 OR1A2Q9Y585 309 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 SCN5AQ14524 2016 aa10.68□□□□□ -0.7
CPSF3-202ENST00000460593 A0A1B0GW55 424 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 A0A1B0GWA3 101 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 TMEM82A0PJX8 343 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 GGT3PA6NGU5 568 aa10.67□□□□□ -0.7
CPSF3-202ENST00000460593 BCL2L11O43521 198 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms