RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CT62P0C5K7 136 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF35P13682 527 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF16P17020 682 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 HNRNPFP52597 415 aaKnown RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 SYT14P1Q58G82 188 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 SIMC1Q8NDZ2 872 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 OR4C3Q8NH37 302 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 SLC19A3Q9BZV2 496 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 GALNT9Q9HCQ5 603 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 POLE4Q9NR33 117 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 SIRT5Q9NXA8 310 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 COA3Q9Y2R0 106 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 PCDHGA10Q9Y5H3 936 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 V9GY05 133 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 PDCD11Q14690 1871 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 TDRD6O60522 2096 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SMAD9O15198 467 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SELENOFO60613 162 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 FUCA1P04066 466 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 ISL1P61371 349 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 RPL18Q07020 188 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SPOCK1Q08629 439 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SSPNQ14714 243 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 MEP1BQ16820 701 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 PRTGQ2VWP7 1150 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 GAB4Q2WGN9 574 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 MRM1Q6IN84 353 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 DND1Q8IYX4 353 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 OR51T1Q8NGJ9 327 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 BRIX1Q8TDN6 353 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 KCNE4Q8WWG9 221 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 APH1AQ96BI3 265 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 MBOAT4Q96T53 435 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 TSPAN10Q9H1Z9 355 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 ABCG5Q9H222 651 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 LHX9Q9NQ69 397 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 TBC1D24Q9ULP9 559 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 PATJQ8NI35 1801 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SCN3AQ9NY46 2000 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 PRAMEF27A3QJZ7 478 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 CBR3O75828 277 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 HIST1H1CP16403 213 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 C21orf58P58505 322 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 FXYD6P3P58550 94 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 RPS18P62269 152 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SNTB2Q13425 540 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 CNN3Q15417 329 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 ACKR1Q16570 336 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF181Q2M3W8 571 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 MAML2Q8IZL2 1156 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 CASTOR1Q8WTX7 329 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 PIGCQ92535 297 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 TEAD3Q99594 435 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 POTEKPQ9BYX7 375 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SIRT3Q9NTG7 399 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 MRPL15Q9P015 296 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 CEPT1Q9Y6K0 416 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 CACNA1CQ13936 2221 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 PLSCR5A0PG75 271 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF850A8MQ14 1090 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 H3BUI4 141 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 ITGB2P05107 769 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 TFAP2AP05549 437 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 MAP2K3P46734 347 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 LSSP48449 732 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 CLPPQ16740 277 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 PLCXD3Q63HM9 321 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 GHSRQ92847 366 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF845Q96IR2 970 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 HINT3Q9NQE9 182 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 CMC2Q9NRP2 79 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF346Q9UL40 294 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 NDRG4Q9ULP0 352 aaKnown RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 A6NHS1 94 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 TMEM212A6NML5 194 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 INMT-MINDY4F8WBC2 141 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SLC2A10O95528 541 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SDHAP31040 664 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 GABRA5P31644 462 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SUMO3P55854 103 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-213ENST00000448038 FOXF1Q12946 379 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 P2RY14Q15391 338 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 OR5M11Q96RB7 305 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 GABARAPL3Q9BY60 117 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 SYNPO2LQ9H987 977 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 APMAPQ9HDC9 416 aa6.76□□□□□ -1.33
SYNE1-213ENST00000448038 A0A087WZY1 265 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 A0A0X1KG70 313 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 ACOD1A6NK06 481 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 ZAR1LA6NP61 321 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF814B7Z6K7 855 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 CXCL13O43927 109 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 ARSBP15848 533 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 LSAMPQ13449 338 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 NDUFA5Q16718 116 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 OR10G3Q8NGC4 313 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 ARHGDIGQ99819 225 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 MRI1Q9BV20 369 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 MYOTQ9UBF9 498 aa6.75□□□□□ -1.33
SYNE1-213ENST00000448038 OSGIN1Q9UJX0 560 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms