RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 GAS2L1Q99501 681 aaPredicted RBP13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 KLHL31Q9H511 634 aa13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 PMS2P1A4D2B8 440 aa13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 MAN2B1O00754 1011 aa13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 PSMB5P28074 263 aa13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 TGIF1Q15583 401 aa13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 IRF7Q92985 503 aa13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 ARL11Q969Q4 196 aa13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 HAVCR1Q96D42 359 aa13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 NKX3-1Q99801 234 aaPredicted RBP13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 UTP23Q9BRU9 249 aaKnown RBP13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 SGPP1Q9BX95 441 aa13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 KRCC1Q9NPI7 259 aaPredicted RBP13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 USP36Q9P275 1121 aaKnown RBP13.48□□□□□ -0.25
NCKIPSD-204ENST00000416649 KLF4O43474 513 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 MAS1P04201 325 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 ZNF14P17017 642 aaPredicted RBP13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 GPR143P51810 404 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 LY6G6FQ5SQ64 297 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 FRRS1Q6ZNA5 592 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 SAMD14Q8IZD0 417 aaPredicted RBP13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 ARHGDIGQ99819 225 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 HRH4Q9H3N8 390 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 TRPV4Q9HBA0 871 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 TCF7L1Q9HCS4 588 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 CMC2Q9NRP2 79 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 DZANK1Q9NVP4 752 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 AGPAT2O15120 278 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 ZNF749O43361 778 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 OR1F1O43749 312 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 ZNF3P17036 446 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 ATP1B3P54709 279 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 DCDP81605 110 aaKnown RBP13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 ODF4Q2M2E3 257 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 C22orf39Q6P5X5 142 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 C17orf64Q86WR6 236 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 TMED6Q8WW62 240 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 C19orf43Q9BQ61 176 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 SPHK2Q9NRA0 654 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 CDV3Q9UKY7 258 aaKnown RBP13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 LTBP2Q14767 1821 aa13.47□□□□□ -0.25
NCKIPSD-204ENST00000416649 IGHV2-70P01814 119 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 OR4E1P0C645 316 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 NQO2P16083 231 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 ABCD3P28288 659 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 SDHAP31040 664 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 AQP2P41181 271 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 MC3RP41968 323 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 PDX1P52945 283 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 DUSP2Q05923 314 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 ECH1Q13011 328 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 C12orf40Q86WS4 652 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 WDSUB1Q8N9V3 476 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 OR4K13Q8NH42 304 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 PPP1R1CQ8WVI7 109 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 WDR34Q96EX3 536 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 MS4A8Q9BY19 250 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 DTX4Q9Y2E6 619 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 OBSL1O75147 1896 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 TRAV18A0A075B6X5 111 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 A0A1B0GVT2 93 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 WASH3PC4AMC7 463 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 KLK3P07288 261 aaPredicted RBP13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 RAB40ALP0C0E4 278 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 ABOP16442 354 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 ACTC1P68032 377 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 ACTA1P68133 377 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 MRPS10P82664 201 aaKnown RBP13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 C11orf87Q6NUJ2 197 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 C3orf33Q6P1S2 294 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 WDR88Q6ZMY6 472 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 LNX2Q8N448 690 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 INO80EQ8NBZ0 244 aaPredicted RBP13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 DMBX1Q8NFW5 382 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 OR52E2Q8NGJ4 325 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 STOML3Q8TAV4 291 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 NUBPLQ8TB37 319 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 RAB40AQ8WXH6 277 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 COL26A1Q96A83 441 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 MAP3K3Q99759 626 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 LHX9Q9NQ69 397 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 UQCC1Q9NVA1 299 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 TNFSF18Q9UNG2 199 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 SLC35A3Q9Y2D2 325 aa13.46□□□□□ -0.25
NCKIPSD-204ENST00000416649 C5orf52A6NGY3 159 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 OTOL1A6NHN0 477 aaPredicted RBP13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 WRBO00258 174 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 NDUFS4O43181 175 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 OR2F2O95006 317 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 F3P13726 295 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 PGDP52209 483 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 PSMD4P55036 377 aaKnown RBP13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 LTBQ06643 244 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 OR2F1Q13607 317 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 KCNAB1Q14722 419 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 MPPED2Q15777 294 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 SCGB2B2Q4G0G5 96 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 ARSIQ5FYB1 569 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 PRAMEF17Q5VTA0 474 aa13.46□□□□□ -0.26
NCKIPSD-204ENST00000416649 FIGNL1Q6PIW4 674 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms