RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SELENOFO60613 162 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 TPOP07202 933 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 CCKBRP32239 447 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 TAS2R43P59537 309 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 KCNAB1Q14722 419 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 GLYR1Q49A26 553 aaPredicted RBP11□□□□□ -0.65
HMGB1-206ENST00000405805 EIF5AL1Q6IS14 154 aaKnown RBP11□□□□□ -0.65
HMGB1-206ENST00000405805 LILRA6Q6PI73 481 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 FIGLAQ6QHK4 219 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 TMEM64Q6YI46 380 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 TMEM200AQ86VY9 491 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 ADGRG3Q86Y34 549 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 CAMKVQ8NCB2 501 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 OR2A1Q8NGT9 310 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 RAB3CQ96E17 227 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 SLC19A3Q9BZV2 496 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 ATG5Q9H1Y0 275 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 ING1Q9UK53 422 aaPredicted RBP11□□□□□ -0.65
HMGB1-206ENST00000405805 SIRT4Q9Y6E7 314 aaPredicted RBP11□□□□□ -0.65
HMGB1-206ENST00000405805 SMCO3A2RU48 225 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 TMEM229AB2RXF0 380 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 REEP5Q00765 189 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 SLC48A1Q6P1K1 146 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 THSD4Q6ZMP0 1018 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF836Q6ZNA1 936 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 PEG10Q86TG7 708 aaKnown RBP11□□□□□ -0.65
HMGB1-206ENST00000405805 HIST2H2ABQ8IUE6 130 aaPredicted RBP11□□□□□ -0.65
HMGB1-206ENST00000405805 OR52I2Q8NH67 350 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 RASD2Q96D21 266 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 SEC22AQ96IW7 307 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 ELF4Q99607 663 aaPredicted RBP11□□□□□ -0.65
HMGB1-206ENST00000405805 RAB11FIP5Q9BXF6 653 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 NXF2Q9GZY0 626 aaKnown RBP11□□□□□ -0.65
HMGB1-206ENST00000405805 SLC6A20Q9NP91 592 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 APOBEC3BQ9UH17 382 aaKnown RBP11□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF346Q9UL40 294 aaKnown RBP11□□□□□ -0.65
HMGB1-206ENST00000405805 SHISA3A0PJX4 238 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 CDC14CA4D256 554 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 F5H5P2 479 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 PTP4A3O75365 173 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 SBK2P0C263 348 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 TFPIP10646 304 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 PTBP1P26599 531 aaKnown RBP eCLIP10.99□□□□□ -0.65
HMGB1-206ENST00000405805 CTXN1P60606 82 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 KLHL24Q6TFL4 600 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 METAP1DQ6UB28 335 aaPredicted RBP10.99□□□□□ -0.65
HMGB1-206ENST00000405805 SLC35D2Q76EJ3 337 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 ABHD13Q7L211 337 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 HPSE2Q8WWQ2 592 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 TSPAN10Q9H1Z9 355 aaPredicted RBP10.99□□□□□ -0.65
HMGB1-206ENST00000405805 SLC35A3Q9Y2D2 325 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 SLC6A5Q9Y345 797 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 A0A0B4J293 547 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 CENPVL1A0A0U1RR11 272 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 C17orf113A0A1B0GUU1 675 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 FAM74A7A6NL05 159 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 GPR31O00270 319 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 RNGTTO60942 597 aaKnown RBP10.99□□□□□ -0.65
HMGB1-206ENST00000405805 RAB3DO95716 219 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 CSF2RBP32927 897 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 CDK5Q00535 292 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 FAM74A3Q4VXF1 159 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF628Q5EBL2 1059 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 METRNLQ641Q3 311 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF770Q6IQ21 691 aaPredicted RBP10.99□□□□□ -0.65
HMGB1-206ENST00000405805 TRILQ7L0X0 811 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 SLC35F2Q8IXU6 374 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 LRRC56Q8IYG6 542 aaPredicted RBP10.99□□□□□ -0.65
HMGB1-206ENST00000405805 SCARB1Q8WTV0 552 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 CBLCQ9ULV8 474 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 A0A0A6YYC8 382 aaPredicted RBP10.99□□□□□ -0.65
HMGB1-206ENST00000405805 I3L1I5 382 aaPredicted RBP10.99□□□□□ -0.65
HMGB1-206ENST00000405805 RRASP10301 218 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 PPP3CBP16298 524 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 NCMAPQ5T1S8 102 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 MFSD12Q6NUT3 480 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 OR52R1Q8NGF1 315 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 OR52B4Q8NGK2 314 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 THAP3Q8WTV1 239 aaPredicted RBP10.99□□□□□ -0.65
HMGB1-206ENST00000405805 BCL2L14Q9BZR8 327 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 PRSS16Q9NQE7 514 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 MRPL22Q9NWU5 206 aaKnown RBP10.99□□□□□ -0.65
HMGB1-206ENST00000405805 KLHL9Q9P2J3 617 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF236Q9UL36 1845 aa10.99□□□□□ -0.65
HMGB1-206ENST00000405805 A0A1B0GWA3 101 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SC5DO75845 299 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SCGB1D2O95969 90 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 AGR2O95994 175 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SPP1P10451 314 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 TBXA2RP21731 343 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 DNASE1L1P49184 302 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF77Q15935 545 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 TANGO2Q6ICL3 276 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 TTC9Q92623 222 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SIGLEC11Q96RL6 698 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 CMKLR1Q99788 373 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 ADAT1Q9BUB4 502 aaKnown RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 MRPS33Q9Y291 106 aaKnown RBP10.98□□□□□ -0.65
HMGB1-206ENST00000405805 CHP2O43745 196 aa10.98□□□□□ -0.65
HMGB1-206ENST00000405805 SOX15O60248 233 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms