RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TERB2Q8NHR7 220 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 CDS1Q92903 461 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 EDEM2Q9BV94 578 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 SELENOIQ9C0D9 397 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 TAF9BQ9HBM6 251 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 MRPS33Q9Y291 106 aaKnown RBP8.59□□□□□ -1.03
COL28A1-201ENST00000399429 CDK5RAP2Q96SN8 1893 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 COL18A1P39060 1754 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 MYO9BQ13459 2157 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 A0A1W2PPH5 198 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 C11orf98E9PRG8 122 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 AP4M1O00189 453 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 GCM2O75603 506 aaPredicted RBP8.59□□□□□ -1.03
COL28A1-201ENST00000399429 HPP00738 406 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 PMP2P02689 132 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 OR2T7P0C7T2 308 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 HOXB1P14653 301 aaPredicted RBP8.59□□□□□ -1.03
COL28A1-201ENST00000399429 PSMB6P28072 239 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 IRS1P35568 1242 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 PCBP4P57723 403 aaKnown RBP8.59□□□□□ -1.03
COL28A1-201ENST00000399429 ZNF280AP59817 542 aaPredicted RBP8.59□□□□□ -1.03
COL28A1-201ENST00000399429 RAP1AP62834 184 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 BDH1Q02338 343 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 PJVKQ0ZLH3 352 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 ALG11Q2TAA5 492 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 LURAP1LQ8IV03 231 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 GATSQ8NAP1 163 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 ZNF511Q8NB15 262 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 OR5AR1Q8NGP9 310 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 OR2T27Q8NH04 317 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 PFN4Q8NHR9 129 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 FOXN4Q96NZ1 517 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 CLCC1Q96S66 551 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 MYADMQ96S97 322 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 NKX3-1Q99801 234 aaPredicted RBP8.59□□□□□ -1.03
COL28A1-201ENST00000399429 GPR62Q9BZJ7 368 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 NELFAQ9H3P2 528 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 GLIPR2Q9H4G4 154 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 MED9Q9NWA0 146 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 RASL12Q9NYN1 266 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 PCDHGA5Q9Y5G8 931 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 A0A087WV62 115 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 KDM4FA0A1W2PPD8 638 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 PQLC2LA1A4F0 135 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 ZNF840PA6NDX5 716 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 ADAM10O14672 748 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 SLC35G6P0C7Q6 338 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 RPA2P15927 270 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 TAGLN2P37802 199 aaKnown RBP8.59□□□□□ -1.03
COL28A1-201ENST00000399429 VASPP50552 380 aaPredicted RBP8.59□□□□□ -1.03
COL28A1-201ENST00000399429 ACY1Q03154 408 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 PDE7AQ13946 482 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 PLEKHN1Q494U1 663 aaPredicted RBP8.59□□□□□ -1.03
COL28A1-201ENST00000399429 Q499Y3 187 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 YAF2Q8IY57 180 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 CHST14Q8NCH0 376 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 HPSE2Q8WWQ2 592 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 NMNAT3Q96T66 252 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 ACTRT3Q9BYD9 372 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 OPA3Q9H6K4 179 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 PLEKHA1Q9HB21 404 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 ADAM18Q9Y3Q7 739 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 ATG4BQ9Y4P1 393 aa8.59□□□□□ -1.03
COL28A1-201ENST00000399429 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 LINC01387J3KSC0 135 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 M0QZQ0 153 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 KCNAB3O43448 404 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 TNFSF12O43508 249 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ONECUT3O60422 494 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 SELENOFO60613 162 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 LEFTY1O75610 366 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ASGR2P07307 311 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 FABP4P15090 132 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 RPS2P15880 293 aaKnown RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 S1PR1P21453 382 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 OPRD1P41143 372 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 PXNP49023 591 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 SPOCK1Q08629 439 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ENPP2Q13822 863 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 OR1Q1Q15612 314 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 HMGN3Q15651 99 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 DECR1Q16698 335 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 GXYLT1Q4G148 440 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 HIST2H3PS2Q5TEC6 136 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 GDF6Q6KF10 455 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ZC3H14Q6PJT7 736 aaKnown RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF705AQ6ZN79 300 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 MRPL41Q8IXM3 137 aaKnown RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 PLPP7Q8NBV4 271 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 SLC30A7Q8NEW0 376 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 SMIM19Q96E16 107 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ELF4Q99607 663 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 GPA33Q99795 319 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 CCDC86Q9H6F5 360 aaKnown RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 PDFQ9HBH1 243 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 EPHA6Q9UF33 1036 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF230Q9UIE0 474 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-201ENST00000399429 MAFFQ9ULX9 164 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 WASF3Q9UPY6 502 aa8.58□□□□□ -1.04
COL28A1-201ENST00000399429 SIRT4Q9Y6E7 314 aaPredicted RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms