RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 ZNF726A6NNF4 738 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 RAD51DO75771 328 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 IFNGR1P15260 489 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 PPP3CBP16298 524 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 HOXB6P17509 224 aaKnown RBP13.09□□□□□ -0.31
COL9A1-204ENST00000370496 IGHV1-2P23083 117 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 AQP2P41181 271 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 SLC9A3P48764 834 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 ZP4Q12836 540 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 MELKQ14680 651 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 SEC23BQ15437 767 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 STK11Q15831 433 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 SFRP5Q5T4F7 317 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 C9orf135Q5VTT2 229 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 SLC35D2Q76EJ3 337 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 OAFQ86UD1 273 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 GPR137CQ8N3F9 429 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 S100PBPQ96BU1 408 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 DACH2Q96NX9 599 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 OR2M2Q96R28 347 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 HDHD5Q9BXW7 423 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 REEP1Q9H902 201 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 INIPQ9NRY2 104 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 ZNF226Q9NYT6 803 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 TAS2R5Q9NYW4 299 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.09□□□□□ -0.31
COL9A1-204ENST00000370496 HIF3AQ9Y2N7 669 aa13.09□□□□□ -0.31
COL9A1-204ENST00000370496 FLNBO75369 2602 aaKnown RBP13.09□□□□□ -0.31
COL9A1-204ENST00000370496 NBPF19A0A087WUL8 3843 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 CIB4A0PJX0 185 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 TNFRSF11BO00300 401 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 CLOCKO15516 846 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 OR10H3O60404 316 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 KRT36O76013 467 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 F13BP05160 661 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 HOXC12P31275 282 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 IFNGR2P38484 337 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 DAP3P51398 398 aaKnown RBP13.08□□□□□ -0.31
COL9A1-204ENST00000370496 BIDP55957 195 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 RPS4XP62701 263 aaKnown RBP13.08□□□□□ -0.31
COL9A1-204ENST00000370496 LGALS3BPQ08380 585 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 TAF11Q15544 211 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 ALG10Q5BKT4 473 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 FBXW10Q5XX13 1052 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 HDDC2Q7Z4H3 204 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 TMEM123Q8N131 208 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 OR51A7Q8NH64 312 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 MOSPD2Q8NHP6 518 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 CANT1Q8WVQ1 401 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 WFIKKN1Q96NZ8 548 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 EMC6Q9BV81 110 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 OR10A4Q9H209 315 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 YY1AP1Q9H869 796 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 B3GAT2Q9NPZ5 323 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 SAMHD1Q9Y3Z3 626 aaKnown RBP13.08□□□□□ -0.31
COL9A1-204ENST00000370496 LYVE1Q9Y5Y7 322 aa13.08□□□□□ -0.31
COL9A1-204ENST00000370496 TCRBV3S1A0A5B6 114 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 SLC35F4A4IF30 521 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 CDC42EP2O14613 210 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 CASKO14936 926 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 ZNF432O94892 652 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 ITGA5P08648 1049 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 EPXP11678 715 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 CDH2P19022 906 aaPredicted RBP13.07□□□□□ -0.32
COL9A1-204ENST00000370496 MPGP29372 298 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 SSTR2P30874 369 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 OMPP47874 163 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 TGFBR3Q03167 851 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 TLE4Q04727 773 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 TOP3AQ13472 1001 aaPredicted RBP13.07□□□□□ -0.32
COL9A1-204ENST00000370496 CAMK2DQ13557 499 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 ANKDD1AQ495B1 522 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 OR2T5Q6IEZ7 315 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 ALKBH2Q6NS38 261 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 HMBOX1Q6NT76 420 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 TMPRSS11FQ6ZWK6 438 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 ASRGL1Q7L266 308 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 TMEM200AQ86VY9 491 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 ZNF433Q8N7K0 673 aaPredicted RBP13.07□□□□□ -0.32
COL9A1-204ENST00000370496 OR6N1Q8NGY5 312 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 OR2T29Q8NH02 315 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 TXNDC15Q96J42 360 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 ADAD1Q96M93 576 aaKnown RBP13.07□□□□□ -0.32
COL9A1-204ENST00000370496 FUZQ9BT04 418 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 CHID1Q9BWS9 393 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 LINC00470Q9BZP3 86 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 U3KQV3 271 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 CRYBG3Q68DQ2 2970 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 M0R3G1 203 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 GNGT2O14610 69 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 UPK3AO75631 287 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 BCL10O95999 233 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 CST1P01037 141 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 RPL4P36578 427 aaKnown RBP13.07□□□□□ -0.32
COL9A1-204ENST00000370496 LIMS1P48059 325 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 CSNK1A1P48729 337 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 PRPS1P60891 318 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 ROR2Q01974 943 aaKnown RBP13.07□□□□□ -0.32
COL9A1-204ENST00000370496 IGFN1Q86VF2 1251 aa13.07□□□□□ -0.32
COL9A1-204ENST00000370496 WFDC8Q8IUA0 241 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms