RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TEAD3Q99594 435 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 C1orf123Q9NWV4 160 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 WIF1Q9Y5W5 379 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 RP1L1Q8IWN7 2480 aaPredicted RBP18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 HSBP1L1C9JCN9 74 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 MSTNO14793 375 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 NSA2O95478 260 aaKnown RBP18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 DBHP09172 617 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 SBK2P0C263 348 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 PVRP15151 417 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 CLDN2P57739 230 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 FABP5Q01469 135 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 ALKBH1Q13686 389 aaKnown RBP18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 GLYATL3Q5SZD4 288 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 HTR3DQ70Z44 454 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 ADAMTS4O75173 837 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 RUNX3Q13761 415 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 SNTB1Q13884 538 aaKnown RBP18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 RBM39Q14498 530 aaKnown RBP18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 XAF1Q6GPH4 301 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 LILRA3Q8N6C8 439 aaPredicted RBP18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 C12orf57Q99622 126 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 EVA1AQ9H8M9 152 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 STEAP1Q9UHE8 339 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 ABCA3Q99758 1704 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 MCCD1P59942 119 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 CMSS1Q9BQ75 279 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 NIPSNAP3BQ9BS92 247 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 C20orf24Q9BUV8 137 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 ANKRD19PQ9H560 264 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 TACR3P29371 465 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 POU3F1Q03052 451 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 TMEM164Q5U3C3 297 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 ESPNLQ6ZVH7 1005 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 USP51Q70EK9 711 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 RHOUQ7L0Q8 258 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 NKAIN4Q8IVV8 208 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 KCNRGQ8N5I3 272 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 OR56B1Q8NGI3 324 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 PDXPQ96GD0 296 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 LGI1O95970 557 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 RAB31Q13636 194 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 TMEM41BQ5BJD5 291 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 ZBTB37Q5TC79 503 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 TCTE3Q8IZS6 198 aa18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 HINT3Q9NQE9 182 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 DDX60LQ5H9U9 1706 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-202ENST00000356786 OTOL1A6NHN0 477 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 SLC6A11P48066 632 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 EMP3P54852 163 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 RTL6Q6ICC9 239 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 MDGA2Q7Z553 956 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 CCDC190Q86UF4 302 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 FAM160A2Q8N612 972 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 FRMD1Q8N878 549 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 MCOLN1Q9GZU1 580 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 CDCP1Q9H5V8 836 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 PRSS16Q9NQE7 514 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 SERTAD4Q9NUC0 356 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 TP53TG5Q9Y2B4 290 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 URGCP-MRPS24S4R325 110 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 TCRBV21S2A2A0A5A6 115 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 HHLA1C9JL84 531 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 LGALS8O00214 317 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 MT-CO2P00403 227 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 NTSR1P30989 418 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 PLPP7Q8NBV4 271 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 APOOQ9BUR5 198 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 DOK2O60496 412 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 NPPBP16860 134 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 FAHD1Q6P587 224 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 SLC16A11Q8NCK7 471 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 OR5K2Q8NHB8 316 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 P2RY12Q9H244 342 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 FLVCR2Q9UPI3 526 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 A0A1B0GTL3 188 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 AANATQ16613 207 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 PRSS36Q5K4E3 855 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 LPCAT3Q6P1A2 487 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 TMEM99Q8N816 258 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 CHRDQ9H2X0 955 aa18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 GPR55Q9Y2T6 319 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-202ENST00000356786 C17orf113A0A1B0GUU1 675 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 A0A1W2PPV4 95 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 KLKB1P03952 638 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 RAD52P43351 418 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 TAS2R30P59541 319 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 UBE2MP61081 183 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 CLINT1Q14677 625 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 TMEM88Q6PEY1 159 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 NLGN4YQ8NFZ3 816 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 IL1F10Q8WWZ1 152 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 POFUT1Q9H488 388 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 WDR76Q9H967 626 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 NCDNQ9UBB6 729 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 FITM1A5D6W6 292 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 DUX1O43812 170 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 PER3P56645 1201 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 ACVR1Q04771 509 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms