RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 SEC23BQ15437 767 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 MAPK14Q16539 360 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 RNF151Q2KHN1 245 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 C6orf141Q5SZD1 244 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 PDZK1Q5T2W1 519 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 CCNJQ5T5M9 372 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 MEDAGQ5VYS4 303 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 SLX4IPQ5VYV7 408 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 PLAG1Q6DJT9 500 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 PODNL1Q6PEZ8 512 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 KLHL17Q6TDP4 642 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 PAMR1Q6UXH9 720 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 ZNF730Q6ZMV8 503 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 TMPRSS11FQ6ZWK6 438 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 RRM2BQ7LG56 351 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 CPEB2Q7Z5Q1 589 aaKnown RBP6.26□□□□□ -1.41
VPS13A-201ENST00000355766 FGD2Q7Z6J4 655 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 LACC1Q8IV20 430 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 PRSS58Q8IYP2 241 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 ZNF786Q8N393 782 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 CLIP4Q8N3C7 705 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 MDS2Q8NDY4 140 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 SIMC1Q8NDZ2 872 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 NFAM1Q8NET5 270 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-201ENST00000355766 OR52J3Q8NH60 311 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 LILRB4Q8NHJ6 448 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 M1APQ8TC57 530 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 SLC22A8Q8TCC7 542 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 GNPDA2Q8TDQ7 276 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 FCGR1BQ92637 280 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 OSTF1Q92882 214 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 ZG16BQ96DA0 208 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 BCL7BQ9BQE9 202 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 TMEM43Q9BTV4 400 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 POLDIP3Q9BY77 421 aaKnown RBP6.26□□□□□ -1.41
VPS13A-201ENST00000355766 NDEL1Q9GZM8 345 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 LAT2Q9GZY6 243 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 ZNF700Q9H0M5 742 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 QRSL1Q9H0R6 528 aaKnown RBP6.26□□□□□ -1.41
VPS13A-201ENST00000355766 NXF5Q9H1B4 397 aaKnown RBP6.26□□□□□ -1.41
VPS13A-201ENST00000355766 RIBC2Q9H4K1 309 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 DUSP21Q9H596 190 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 MMP25Q9NPA2 562 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 IMPAD1Q9NX62 359 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 SCN3BQ9NY72 215 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 STMN3Q9NZ72 180 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 CNOT2Q9NZN8 540 aaKnown RBP6.26□□□□□ -1.41
VPS13A-201ENST00000355766 SELENONQ9NZV5 590 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 LRFN1Q9P244 771 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 TEKT2Q9UIF3 430 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 BAIAP2Q9UQB8 552 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 DTX4Q9Y2E6 619 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 CDH10Q9Y6N8 788 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 CSPG4Q6UVK1 2322 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 COL6A5A8TX70 2615 aa6.26□□□□□ -1.41
VPS13A-201ENST00000355766 IGLV3-32A0A0A0MS00 114 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 CENPVL1A0A0U1RR11 272 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 J3KTA2 159 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 OVOL3O00110 214 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 SLC1A7O00341 560 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 ZNF264O43296 627 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 CDC40O60508 579 aaKnown RBP eCLIP6.25□□□□□ -1.41
VPS13A-201ENST00000355766 TPST2O60704 377 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 MITFO75030 526 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-201ENST00000355766 LYPD3O95274 346 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 UTS2O95399 124 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 ANGPTL1O95841 491 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 CSTAP01040 98 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 GASTP01350 101 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 IGKV1D-16P01601 117 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 ICAM2P13598 275 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 GABRB1P18505 474 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 CHMP24386 653 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 HTR2AP28223 471 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 ABCD3P28288 659 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 ACAA2P42765 397 aaKnown RBP6.25□□□□□ -1.41
VPS13A-201ENST00000355766 HTR3AP46098 478 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 OMPP47874 163 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 ALDH3B2P48448 385 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 CLK3P49761 638 aaKnown RBP6.25□□□□□ -1.41
VPS13A-201ENST00000355766 EFNA3P52797 238 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 PRKCDQ05655 676 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 SNTA1Q13424 505 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 TMED1Q13445 227 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 FOXE3Q13461 319 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 OR1Q1Q15612 314 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 ZIK1Q3SY52 487 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-201ENST00000355766 RNLSQ5VYX0 342 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 C12orf73Q69YU5 71 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 WBP2NLQ6ICG8 309 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 SLC27A4Q6P1M0 643 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 PAPD4Q6PIY7 484 aaKnown RBP6.25□□□□□ -1.41
VPS13A-201ENST00000355766 CASP12Q6UXS9 341 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 ZNF620Q6ZNG0 422 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 WDR53Q7Z5U6 358 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-201ENST00000355766 ZER1Q7Z7L7 766 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 RBM45Q8IUH3 476 aaKnown RBP6.25□□□□□ -1.41
VPS13A-201ENST00000355766 P3H2Q8IVL5 708 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 GPALPP1Q8IXQ4 340 aa6.25□□□□□ -1.41
VPS13A-201ENST00000355766 CDK20Q8IZL9 346 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms