RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 MOSPD2Q8NHP6 518 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 CANT1Q8WVQ1 401 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 S100PBPQ96BU1 408 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 ZC3HAV1LQ96H79 300 aaKnown RBP14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 TXNDC15Q96J42 360 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 ALKBH3Q96Q83 286 aaPredicted RBP14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 ALPK1Q96QP1 1244 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 OR2M2Q96R28 347 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 FUZQ9BT04 418 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 HDHD5Q9BXW7 423 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 KRCC1Q9NPI7 259 aaPredicted RBP14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 ANKHD1Q8IWZ3 2542 aaKnown RBP14.02□□□□□ -0.17
CCDC28A-201ENST00000332797 DCHS2Q6V1P9 2916 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 TRAV27A0A087WT01 109 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 SH3PXD2BA1X283 911 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 SLC35F4A4IF30 521 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 OR6C65A6NJZ3 312 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 F13BP05160 661 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 EPXP11678 715 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 FOXG1P55316 489 aaPredicted RBP14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 MELKQ14680 651 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 NHLRC1Q6VVB1 395 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 ASRGL1Q7L266 308 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 OAFQ86UD1 273 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 ZNF295-AS1Q8N0V1 137 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 TMEM123Q8N131 208 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 ZNF433Q8N7K0 673 aaPredicted RBP14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 OR13C2Q8NGS9 318 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 OR51A7Q8NH64 312 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 DACH2Q96NX9 599 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 INIPQ9NRY2 104 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 TAS2R16Q9NYV7 291 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 TMCC3Q9ULS5 477 aa14.01□□□□□ -0.17
CCDC28A-201ENST00000332797 A0A1W2PRG6 482 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 TCRBV3S1A0A5B6 114 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 CIB4A0PJX0 185 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 ZNF726A6NNF4 738 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 ZNF587BE7ETH6 402 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 TNFRSF11BO00300 401 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 CDC42EP2O14613 210 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 UPK3AO75631 287 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 RAD51DO75771 328 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 KRT36O76013 467 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 ITGA5P08648 1049 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 PRF1P14222 555 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 PPP3CBP16298 524 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 SLC9A3P48764 834 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 BIDP55957 195 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 TLE4Q04727 773 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 CAMK2DQ13557 499 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 LAPTM4AQ15012 233 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 C1orf146Q5VVC0 180 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 TMPRSS11FQ6ZWK6 438 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 ABHD12BQ7Z5M8 362 aaPredicted RBP14□□□□□ -0.17
CCDC28A-201ENST00000332797 WDFY1Q8IWB7 410 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 GPR137CQ8N3F9 429 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 RSRC1Q96IZ7 334 aaKnown RBP14□□□□□ -0.17
CCDC28A-201ENST00000332797 CHID1Q9BWS9 393 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 OR10A4Q9H209 315 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 MCCC2Q9HCC0 563 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 HIF3AQ9Y2N7 669 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 LYVE1Q9Y5Y7 322 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 PKDREJQ9NTG1 2253 aa14□□□□□ -0.17
CCDC28A-201ENST00000332797 MCIDASD6RGH6 385 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 PDLIM1O00151 329 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 CASKO14936 926 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 CLOCKO15516 846 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 OR10H3O60404 316 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 CIB2O75838 187 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 TSPAN19P0C672 248 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 MPGP29372 298 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 OMPP47874 163 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 RPS4XP62701 263 aaKnown RBP13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 STK11Q15831 433 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 ALG10Q5BKT4 473 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 OR2T5Q6IEZ7 315 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 ALKBH2Q6NS38 261 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 C22orf34Q6ZV56 151 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 OR2T29Q8NH02 315 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 ADAD1Q96M93 576 aaKnown RBP13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 TNFRSF13CQ96RJ3 184 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 LINC00470Q9BZP3 86 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 ZNF226Q9NYT6 803 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 A6NNC1 897 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 M0R3G1 203 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 BCL10O95999 233 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 THBDP07204 575 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 CDH2P19022 906 aaPredicted RBP13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 SSTR2P30874 369 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 LIMS1P48059 325 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 ROR2Q01974 943 aaKnown RBP13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 PPP1R8Q12972 351 aaKnown RBP13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 FHL1Q13642 323 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 ZBED5Q49AG3 693 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 HMBOX1Q6NT76 420 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 LINGO2Q7L985 606 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 IGFN1Q86VF2 1251 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 WFDC8Q8IUA0 241 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 C20orf196Q8IYI0 205 aa13.99□□□□□ -0.17
CCDC28A-201ENST00000332797 OR6N1Q8NGY5 312 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms