RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 DIMT1Q9UNQ2 313 aaKnown RBP12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ENDOGQ14249 297 aaKnown RBP12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ADPRMQ3LIE5 342 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 C5orf46Q6UWT4 87 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 SLC46A3Q7Z3Q1 461 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 HRASLS5Q96KN8 279 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ALG12Q9BV10 488 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ACSS1Q9NUB1 689 aaPredicted RBP12.89□□□□□ -0.35
CSPG4-201ENST00000308508 GNG12Q9UBI6 72 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 MUTYHQ9UIF7 546 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ACAD8Q9UKU7 415 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 SSUH2Q9Y2M2 353 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 PTTG1IPP53801 180 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 SUSD2Q9UGT4 822 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 J3KTA2 159 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 SGK494L7N484 410 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 CHEK1O14757 476 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 SULT1C4O75897 302 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 TBPP20226 339 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 CD68P34810 354 aaPredicted RBP12.88□□□□□ -0.35
CSPG4-201ENST00000308508 ILKQ13418 452 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 WDR88Q6ZMY6 472 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 LRRC18Q8N456 261 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 OR13C2Q8NGS9 318 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 FIBINQ8TAL6 211 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF566Q969W8 418 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 SEMA6CQ9H3T2 930 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 POMT1Q9Y6A1 747 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 FABP1P07148 127 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 DUSP1P28562 367 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 FOLR3P41439 243 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 CLDN12P56749 244 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 MRPL2Q5T653 305 aaKnown RBP12.88□□□□□ -0.35
CSPG4-201ENST00000308508 MBOAT2Q6ZWT7 520 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 BPIFCQ8NFQ6 507 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 CLSTN3Q9BQT9 956 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 ULBP2Q9BZM5 246 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 ERVMER34-1Q9H9K5 563 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 MED1Q15648 1581 aaPredicted RBP12.88□□□□□ -0.35
CSPG4-201ENST00000308508 PDGFBP01127 241 aaPredicted RBP12.88□□□□□ -0.35
CSPG4-201ENST00000308508 UBE2G1P62253 170 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 LGI3Q8N145 548 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 SLC24A4Q8NFF2 622 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 SLC25A46Q96AG3 418 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 TRIM77I1YAP6 450 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 HSPB6O14558 160 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 HNRNPA1P09651 372 aaKnown RBP eCLIP12.88□□□□□ -0.35
CSPG4-201ENST00000308508 MMP21Q8N119 569 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 TCTN2Q96GX1 697 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 IGSF21Q96ID5 467 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 MED9Q9NWA0 146 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 TMEM72A0PK05 275 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 LDB3O75112 727 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 PAPLNO95428 1278 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 LCN6P62502 163 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 SLC35A2P78381 396 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 KANSL1Q7Z3B3 1105 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 APCDD1Q8J025 514 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 SLC7A6Q92536 515 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 KIRREL1Q96J84 757 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 RNF150Q9ULK6 438 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 LHX6Q9UPM6 363 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 DCTN6O00399 190 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 C1orf61Q13536 156 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 PM20D1Q6GTS8 502 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 Q6ZRG5 221 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 SLC35G3Q8N808 338 aa12.88□□□□□ -0.35
CSPG4-201ENST00000308508 STRAPQ9Y3F4 350 aaKnown RBP12.88□□□□□ -0.35
CSPG4-201ENST00000308508 C7orf72A4D263 438 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 F2P00734 622 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 PRSS56P0CW18 603 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 OR8G3PP0DMU2 310 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 PAX6P26367 422 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 APEX1P27695 318 aaKnown RBP12.87□□□□□ -0.35
CSPG4-201ENST00000308508 HTR5AP47898 357 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 DCAF7P61962 342 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 TNFRSF17Q02223 184 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 SYT6Q5T7P8 510 aaPredicted RBP12.87□□□□□ -0.35
CSPG4-201ENST00000308508 USP51Q70EK9 711 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 GPRIN1Q7Z2K8 1008 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 CDH26Q8IXH8 852 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 ANKRD53Q8N9V6 530 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 OR52I1Q8NGK6 324 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 ADOQ96SZ5 270 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 CLCF1Q9UBD9 225 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 RBPJLQ9UBG7 517 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF93P35789 620 aaPredicted RBP12.87□□□□□ -0.35
CSPG4-201ENST00000308508 NLRC3Q7RTR2 1065 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF561Q8N587 486 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF596Q8TC21 504 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 CCNL2Q96S94 520 aaPredicted RBP12.87□□□□□ -0.35
CSPG4-201ENST00000308508 SEMA4CQ9C0C4 833 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 SFXN1Q9H9B4 322 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 AK3Q9UIJ7 227 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 HEMK1Q9Y5R4 338 aaPredicted RBP12.87□□□□□ -0.35
CSPG4-201ENST00000308508 HOXC5Q00444 222 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 SLC14A2Q15849 920 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.87□□□□□ -0.35
CSPG4-201ENST00000308508 TOR2AQ5JU69 321 aa12.87□□□□□ -0.35
CSPG4-201ENST00000308508 OR1M1Q8NGA1 313 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms