RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 DCTP40126 519 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 MTCP1P56278 107 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CLDN6P56747 220 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 RAB38P57729 211 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 C18orf21Q32NC0 220 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 EMC4Q5J8M3 183 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 STUMQ69YW2 141 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 LGI3Q8N145 548 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 OR52L2PQ8NGH6 319 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ASB11Q8WXH4 323 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 MS4A4EQ96PG1 132 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 OR1F2PQ96R84 312 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 GPR160Q9UJ42 338 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 MRPS28Q9Y2Q9 187 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CD8B2A6NJW9 211 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 PPM1DO15297 605 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TGFB1I1O43294 461 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 FGF3P11487 239 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 HIST1H1CP16403 213 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ABCD3P28288 659 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 NOVA1P51513 510 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 B2MP61769 119 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF678Q5SXM1 525 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 C9orf135Q5VTT2 229 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 GABRG1Q8N1C3 465 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ARRDC1Q8N5I2 433 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 STXBP6Q8NFX7 210 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 LKAAEAR1Q8TD35 194 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 RTL8AQ9BWD3 113 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 C1QTNF2Q9BXJ5 285 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ADARB2Q9NS39 739 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 IL20RAQ9UHF4 553 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF106Q9H2Y7 1883 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 SPATA31A5Q5VU36 1347 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 SPATA31A7Q8IWB4 1347 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TBC1D3KA0A087X1G2 549 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 hCG_1809904A0A1W2PP81 198 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 A0A1W2PPE2 198 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 A0A1W2PR64 198 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 A0A1W2PRV1 198 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TBC1D3BA6NDS4 549 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TBC1D3FA6NER0 549 aaPredicted RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 C1RP00736 705 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 AHCYP23526 432 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 PBLDP30039 288 aaPredicted RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 SOX10P56693 466 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 BACE1P56817 501 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TGFBR3Q03167 851 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 AMHR2Q16671 573 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 NHSL2Q5HYW2 709 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 SAMD13Q5VXD3 122 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TBC1D3GQ6DHY5 549 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 DRAM2Q6UX65 266 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 PLEKHH3Q7Z736 793 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF429Q86V71 674 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM151BQ8IW70 566 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM183AQ8IXX5 376 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 RTP4Q96DX8 246 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 MAP1LC3CQ9BXW4 147 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 DDX4Q9NQI0 724 aaKnown RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 PCDHA9Q9Y5H5 950 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 DDX60LQ5H9U9 1706 aaKnown RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 M0R2N6 131 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 RAB27BO00194 218 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TGM5O43548 720 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 PLRG1O43660 514 aaKnown RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 COX6CP09669 75 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 ARF6P62330 175 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 GHRHRQ02643 423 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TUSC3Q13454 348 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 PCBP2Q15366 365 aaKnown RBP eCLIP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 CPZQ66K79 652 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 ZBTB44Q8NCP5 570 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 SLC26A10Q8NG04 563 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 OR4K5Q8NGD3 323 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 OR52N2Q8NGI0 321 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 CPT1CQ8TCG5 803 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 HDAC8Q9BY41 377 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 OR10A2Q9H208 303 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 DCDC2BA2VCK2 349 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 OR52A4PA6NMU1 304 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 AGPAT2O15120 278 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 OR1F1O43749 312 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 PIAS1O75925 651 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 IRF2P14316 349 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 ENPP1P22413 925 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 LTBQ06643 244 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 ATP6V1FQ16864 119 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 ACSM3Q53FZ2 586 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 VASNQ6EMK4 673 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 PWWP2BQ6NUJ5 590 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 SFXN4Q6P4A7 337 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 CELF6Q96J87 481 aaKnown RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 TEAD3Q99594 435 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 DOK1Q99704 481 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 WDR61Q9GZS3 305 aaKnown RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 ABHD16BQ9H3Z7 469 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 DDX31Q9H8H2 851 aaKnown RBP4.51□□□□□ -1.69
CSMD3-201ENST00000297405 IL21RQ9HBE5 538 aa4.51□□□□□ -1.69
CSMD3-201ENST00000297405 OR5AC2Q9NZP5 309 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms