RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 Q6ZTK2 550 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 VRK2Q86Y07 508 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 SEC22AQ96IW7 307 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 FER1L6-AS2Q96M78 137 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 MRPS28Q9Y2Q9 187 aaKnown RBP10.58□□□□□ -0.72
PTPN4-201ENST00000263708 DBX1A6NMT0 343 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 SDHDO14521 159 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 KCNJ8Q15842 424 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 ADPRMQ3LIE5 342 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 AVPI1Q5T686 147 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 SLC6A19Q695T7 634 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 RNF150Q9ULK6 438 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 SLC16A6O15403 523 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 TNFRSF4P43489 277 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 PODNL1Q6PEZ8 512 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 LYPD4Q6UWN0 246 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 PDZD3Q86UT5 571 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 MINDY1Q8N5J2 469 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 SFT2D1Q8WV19 159 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 GGHQ92820 318 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 NAT6Q93015 286 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 SLC6A18Q96N87 628 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 SLC29A1Q99808 456 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 PLSCR3Q9NRY6 295 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 GAR1Q9NY12 217 aaKnown RBP10.58□□□□□ -0.72
PTPN4-201ENST00000263708 COQ4Q9Y3A0 265 aa10.58□□□□□ -0.72
PTPN4-201ENST00000263708 RAP2BP61225 183 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 SLC35A1P78382 337 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 EIF4HQ15056 248 aaKnown RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 OPN5Q6U736 354 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 LRRC28Q86X40 367 aaPredicted RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 OR4F15Q8NGB8 312 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 ZNF596Q8TC21 504 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 NPY6RQ99463 290 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 ZCCHC4Q9H5U6 513 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 INTS6Q9UL03 887 aaKnown RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 ADGRB1O14514 1584 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 PHLPP1O60346 1717 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 LRIT2A6NDA9 550 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 FZD7O75084 574 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 KIR2DS3Q14952 304 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 CDC20BQ86Y33 519 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 DNAJC5GQ8N7S2 189 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 OR52E1Q8NGJ3 308 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 OR7D2Q96RA2 312 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 C1QTNF6Q9BXI9 259 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 NXT1Q9UKK6 140 aaKnown RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 PPP3CBP16298 524 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 OPRL1P41146 370 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 NHSL2Q5HYW2 709 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 PNPLA1Q8N8W4 532 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 SIX2Q9NPC8 291 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 IQCF3P0C7M6 154 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 PRSS56P0CW18 603 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 NPY1RP25929 384 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 MRPS10P82664 201 aaKnown RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 TMEM178AQ8NBL3 297 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 OR2M3Q8NG83 312 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 ZNF486Q96H40 463 aaPredicted RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 TECTBQ96PL2 329 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 A0A087WZY1 265 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 TMEM212A6NML5 194 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 DLX5P56178 289 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 ZNF266Q14584 549 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 ZMAT1Q5H9K5 638 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 SLC35F3Q8IY50 421 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 ABHD4Q8TB40 342 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 ENTPD2Q9Y5L3 495 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 TMEM131LA2VDJ0 1609 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 GLCEO94923 617 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 ATXN1LP0C7T5 689 aaKnown RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 PVRP15151 417 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 DTYMKP23919 212 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 HLCSP50747 726 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 ZBED3Q96IU2 234 aaPredicted RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 METTL17Q9H7H0 456 aaPredicted RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 RCE1Q9Y256 329 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 SPAG17Q6Q759 2223 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 BLACEA4D250 179 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 DCDP81605 110 aaKnown RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 OR14A16Q8NHC5 309 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 APH1BQ8WW43 257 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 RP1L1Q8IWN7 2480 aaPredicted RBP10.57□□□□□ -0.72
PTPN4-201ENST00000263708 TRAPPC2P0DI81 140 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 TRAPPC2BP0DI82 140 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 GPR19Q15760 415 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 VAMP3Q15836 100 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 GAREM2Q75VX8 874 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 SYT9Q86SS6 491 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 PQLC3Q8N755 202 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 LURAP1Q96LR2 239 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 CLSTN3Q9BQT9 956 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 RGPD2P0DJD1 1756 aa10.57□□□□□ -0.72
PTPN4-201ENST00000263708 KRBA1A5PL33 1030 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 RNASET2O00584 256 aaKnown RBP10.56□□□□□ -0.72
PTPN4-201ENST00000263708 CIDEAO60543 219 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 ERVPABLB-1P60509 514 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 OR13C9Q8NGT0 318 aa10.56□□□□□ -0.72
PTPN4-201ENST00000263708 CLEC5AQ9NY25 188 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms