RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 TMEM64Q6YI46 380 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 OR6M1Q8NGM8 313 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 HAS2Q92819 552 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 HLA-CQ95604 372 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 HHIPL1Q96JK4 782 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 UBQLN3Q9H347 655 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 LYRM4Q9HD34 91 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 COQ3Q9NZJ6 369 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 MED16Q9Y2X0 877 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 BET1O15155 118 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 FBXO24O75426 580 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 MED6O75586 246 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 TEAD1P28347 426 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 SCGB2A2Q13296 93 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 OR6C1Q96RD1 312 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 STACQ99469 402 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 NIPSNAP1Q9BPW8 284 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 RANGRFQ9HD47 186 aaPredicted RBP12.54□□□□□ -0.4
SF3A1-201ENST00000215793 DUSP22Q9NRW4 184 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 GMPR2Q9P2T1 348 aaKnown RBP12.54□□□□□ -0.4
SF3A1-201ENST00000215793 SNX11Q9Y5W9 270 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 ABHD16AO95870 558 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 PTGER4P35408 488 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 SNRPGP62308 76 aaKnown RBP12.53□□□□□ -0.4
SF3A1-201ENST00000215793 Q6ZTK2 550 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 TMEM255BQ8WV15 326 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 FER1L6-AS2Q96M78 137 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 GNG12Q9UBI6 72 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 DHCR7Q9UBM7 475 aaKnown RBP12.53□□□□□ -0.4
SF3A1-201ENST00000215793 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 TNFSF12O43508 249 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 HBE1P02100 147 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 APEX1P27695 318 aaKnown RBP12.53□□□□□ -0.4
SF3A1-201ENST00000215793 GABREP78334 506 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 XKR7Q5GH72 579 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 METRNLQ641Q3 311 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 LINC00299Q6ZSB3 139 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 SLC16A11Q8NCK7 471 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 UBL7Q96S82 380 aaPredicted RBP12.53□□□□□ -0.4
SF3A1-201ENST00000215793 AMBRA1Q9C0C7 1298 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 SELENOIQ9C0D9 397 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 P2RY12Q9H244 342 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 KIR3DX1Q9H7L2 352 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 SOCS6O14544 535 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 SULT1B1O43704 296 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 TGM6O95932 706 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 SNRNP70P08621 437 aaKnown RBP12.53□□□□□ -0.4
SF3A1-201ENST00000215793 HOXD12P35452 270 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 BCL6P41182 706 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 CASP3P42574 277 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 RACK1P63244 317 aaKnown RBP12.53□□□□□ -0.4
SF3A1-201ENST00000215793 HBG1P69891 147 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 HBG2P69892 147 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 MEP1BQ16820 701 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 SFRP5Q5T4F7 317 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 KDM4DQ6B0I6 523 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 OR52I1Q8NGK6 324 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 DAZAP1Q96EP5 407 aaKnown RBP12.53□□□□□ -0.4
SF3A1-201ENST00000215793 OR5M11Q96RB7 305 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 BMP1P13497 986 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 ENPP1P22413 925 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 KIAA1024LP59773 190 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 CAMK2BQ13554 666 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 STEAP1BQ6NZ63 245 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 SPPL3Q8TCT6 385 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 PPP1R14DQ9NXH3 145 aa12.53□□□□□ -0.4
SF3A1-201ENST00000215793 EIF4E2O60573 245 aaKnown RBP12.52□□□□□ -0.4
SF3A1-201ENST00000215793 CSO75390 466 aaKnown RBP12.52□□□□□ -0.4
SF3A1-201ENST00000215793 PAPLNO95428 1278 aa12.52□□□□□ -0.4
SF3A1-201ENST00000215793 RPS2P15880 293 aaKnown RBP12.52□□□□□ -0.4
SF3A1-201ENST00000215793 JUNBP17275 347 aaPredicted RBP12.52□□□□□ -0.4
SF3A1-201ENST00000215793 FKBP2P26885 142 aaKnown RBP12.52□□□□□ -0.4
SF3A1-201ENST00000215793 BEX5Q5H9J7 111 aa12.52□□□□□ -0.4
SF3A1-201ENST00000215793 STEAP3Q658P3 488 aa12.52□□□□□ -0.4
SF3A1-201ENST00000215793 BRICD5Q6PL45 260 aa12.52□□□□□ -0.4
SF3A1-201ENST00000215793 SLC25A43Q8WUT9 341 aaPredicted RBP12.52□□□□□ -0.4
SF3A1-201ENST00000215793 SLC25A21Q9BQT8 299 aaPredicted RBP12.52□□□□□ -0.4
SF3A1-201ENST00000215793 SLAMF7Q9NQ25 335 aa12.52□□□□□ -0.4
SF3A1-201ENST00000215793 SAGE1Q9NXZ1 904 aa12.52□□□□□ -0.4
SF3A1-201ENST00000215793 PADI1Q9ULC6 663 aa12.52□□□□□ -0.4
SF3A1-201ENST00000215793 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.52□□□□□ -0.4
SF3A1-201ENST00000215793 LRIT2A6NDA9 550 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 HOXC11O43248 304 aaPredicted RBP12.52□□□□□ -0.41
SF3A1-201ENST00000215793 FADS1O60427 444 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 GLCEO94923 617 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF93P35789 620 aaPredicted RBP12.52□□□□□ -0.41
SF3A1-201ENST00000215793 TRIM23P36406 574 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 CARD18P57730 90 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 GALEQ14376 348 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 OPCMLQ14982 345 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 ZMAT1Q5H9K5 638 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 KCNIP4Q6PIL6 250 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF808Q8N4W9 903 aaPredicted RBP12.52□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF775Q96BV0 537 aaPredicted RBP12.52□□□□□ -0.41
SF3A1-201ENST00000215793 SLC19A3Q9BZV2 496 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF814B7Z6K7 855 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 PLPP1O14494 284 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 LCMT2O60294 686 aaKnown RBP12.52□□□□□ -0.41
SF3A1-201ENST00000215793 TPPPO94811 219 aa12.52□□□□□ -0.41
SF3A1-201ENST00000215793 TCRBP04435 133 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms