RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 A0A1W2PRQ8 180 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 AQP12BA6NM10 295 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 SERPINI2O75830 405 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 OR7A10O76100 309 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 FUT4P22083 530 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 CD79BP40259 229 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 PEX19P40855 299 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 DGCR6Q14129 220 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 POU4F3Q15319 338 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 CREB3L2Q70SY1 520 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 AAED1Q7RTV5 226 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 AQP12AQ8IXF9 295 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 OR52J3Q8NH60 311 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 TMEM45BQ96B21 275 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 BPIFA2Q96DR5 249 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 ZNF385AQ96PM9 386 aaKnown RBP16.02■□□□□ 0.16
CLN3-239ENST00000628023 KRCC1Q9NPI7 259 aaPredicted RBP16.02■□□□□ 0.16
CLN3-239ENST00000628023 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.02■□□□□ 0.16
CLN3-239ENST00000628023 SLC7A8Q9UHI5 535 aa16.02■□□□□ 0.16
CLN3-239ENST00000628023 MED13LQ71F56 2210 aa16.02■□□□□ 0.15
CLN3-239ENST00000628023 DHRS12A0PJE2 317 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 C11orf98E9PRG8 122 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 PLPP3O14495 311 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 AKAP8O43823 692 aaKnown RBP16.01■□□□□ 0.15
CLN3-239ENST00000628023 CIB2O75838 187 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 GADD45GO95257 159 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 IGF2P01344 180 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 IGHV3-9P01782 118 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 SAGP10523 405 aaPredicted RBP16.01■□□□□ 0.15
CLN3-239ENST00000628023 FUT1P19526 365 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 RRM2P31350 389 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 CLDN17P56750 224 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 SORDQ00796 357 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 POU3F1Q03052 451 aaPredicted RBP16.01■□□□□ 0.15
CLN3-239ENST00000628023 FAM27E3Q08E93 113 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 SNTB1Q13884 538 aaKnown RBP16.01■□□□□ 0.15
CLN3-239ENST00000628023 PODNL1Q6PEZ8 512 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 MBOAT2Q6ZWT7 520 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 SLC46A3Q7Z3Q1 461 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 CDK20Q8IZL9 346 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 RNF113BQ8IZP6 322 aaKnown RBP16.01■□□□□ 0.15
CLN3-239ENST00000628023 LRRC17Q8N6Y2 441 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 PRSS50Q9UI38 385 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 NOX1Q9Y5S8 564 aa16.01■□□□□ 0.15
CLN3-239ENST00000628023 A0A087WUU8 490 aa16■□□□□ 0.15
CLN3-239ENST00000628023 TRBV4-1A0A0J9YWV2 114 aa16■□□□□ 0.15
CLN3-239ENST00000628023 HTR3EA5X5Y0 456 aa16■□□□□ 0.15
CLN3-239ENST00000628023 TUBAL3A6NHL2 446 aa16■□□□□ 0.15
CLN3-239ENST00000628023 BLOC1S5-TXNDC5H3BN57 136 aa16■□□□□ 0.15
CLN3-239ENST00000628023 RNF13O43567 381 aa16■□□□□ 0.15
CLN3-239ENST00000628023 HPRP00739 348 aa16■□□□□ 0.15
CLN3-239ENST00000628023 ASAH2BP0C7U1 165 aa16■□□□□ 0.15
CLN3-239ENST00000628023 RAP2AP10114 183 aa16■□□□□ 0.15
CLN3-239ENST00000628023 ERFP50548 548 aa16■□□□□ 0.15
CLN3-239ENST00000628023 C1orf146Q5VVC0 180 aa16■□□□□ 0.15
CLN3-239ENST00000628023 NIPAL3Q6P499 406 aa16■□□□□ 0.15
CLN3-239ENST00000628023 TBPL2Q6SJ96 375 aa16■□□□□ 0.15
CLN3-239ENST00000628023 EPHX4Q8IUS5 362 aa16■□□□□ 0.15
CLN3-239ENST00000628023 ZIC4Q8N9L1 334 aa16■□□□□ 0.15
CLN3-239ENST00000628023 SLC7A13Q8TCU3 470 aa16■□□□□ 0.15
CLN3-239ENST00000628023 RSRC1Q96IZ7 334 aaKnown RBP16■□□□□ 0.15
CLN3-239ENST00000628023 B3GAT1Q9P2W7 334 aa16■□□□□ 0.15
CLN3-239ENST00000628023 UPB1Q9UBR1 384 aa16■□□□□ 0.15
CLN3-239ENST00000628023 TMCC3Q9ULS5 477 aa16■□□□□ 0.15
CLN3-239ENST00000628023 EDARQ9UNE0 448 aa16■□□□□ 0.15
CLN3-239ENST00000628023 TMEM5Q9Y2B1 443 aa16■□□□□ 0.15
CLN3-239ENST00000628023 EFCAB9A8MZ26 197 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 MS4A18H0YCH9 400 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 C16orf97H3BN30 126 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 KRT33AO76009 404 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 ADAP00813 363 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 EDNRAP25101 427 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 UGT2B10P36537 528 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 MAGEA2P43356 314 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 KIR2DL3P43628 341 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 GPR4P46093 362 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 LSM11P83369 360 aaKnown RBP eCLIP15.99■□□□□ 0.15
CLN3-239ENST00000628023 PRKCDQ05655 676 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 MS4A18Q3C1V0 323 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 IQCCQ4KMZ1 466 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 Q6ZT83 130 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 PIWIL3Q7Z3Z3 882 aaKnown RBP15.99■□□□□ 0.15
CLN3-239ENST00000628023 CXorf67Q86X51 503 aaPredicted RBP15.99■□□□□ 0.15
CLN3-239ENST00000628023 MEX3DQ86XN8 651 aaKnown RBP15.99■□□□□ 0.15
CLN3-239ENST00000628023 ADGRG5Q8IZF4 528 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 ANKK1Q8NFD2 765 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 CANT1Q8WVQ1 401 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 DHRS1Q96LJ7 313 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 RCE1Q9Y256 329 aa15.99■□□□□ 0.15
CLN3-239ENST00000628023 LOC102725191A0A1B0GVB3 256 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 KRT36O76013 467 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 CNOT4O95628 575 aaKnown RBP15.98■□□□□ 0.15
CLN3-239ENST00000628023 HOXB6P17509 224 aaKnown RBP15.98■□□□□ 0.15
CLN3-239ENST00000628023 MAKP20794 623 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 IL32P24001 234 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 NTF4P34130 210 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 ART1P52961 327 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 FBXW9Q5XUX1 488 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 PXKQ7Z7A4 578 aa15.98■□□□□ 0.15
CLN3-239ENST00000628023 OR4K5Q8NGD3 323 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms