RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ZSCAN12O43309 604 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 LANCL1O43813 399 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 OPN1MWP04001 364 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 ADRA2AP08913 450 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 TLX1NBP0CAT3 122 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 UBTFL1P0CB47 393 aaPredicted RBP1.04□□□□□ -2.24
SCN1A-208ENST00000625916 OPN1MW2P0DN77 364 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 OPN1MW3P0DN78 364 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 ZNF30P17039 623 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 NPR2P20594 1047 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 NT5EP21589 574 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 OMGP23515 440 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 ACADVLP49748 655 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 TNFRSF17Q02223 184 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 TAF9Q16594 264 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 GGTA1PQ4G0N0 100 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 SPIN3Q5JUX0 258 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 OR2G6Q5TZ20 316 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 NCR3LG1Q68D85 454 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 OR52E8Q6IFG1 317 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 PLBD1Q6P4A8 553 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 AFTPHQ6ULP2 937 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 LYPD2Q6UXB3 125 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 ISLR2Q6UXK2 745 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 H2AFVQ71UI9 128 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 THOC6Q86W42 341 aaKnown RBP1.04□□□□□ -2.24
SCN1A-208ENST00000625916 CENPLQ8N0S6 344 aaPredicted RBP1.04□□□□□ -2.24
SCN1A-208ENST00000625916 OR2L13Q8N349 312 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 CNNM3Q8NE01 707 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 SPRYD4Q8WW59 207 aaPredicted RBP1.04□□□□□ -2.24
SCN1A-208ENST00000625916 RBMXL1Q96E39 390 aaKnown RBP1.04□□□□□ -2.24
SCN1A-208ENST00000625916 C7orf34Q96L11 122 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 TUBGCP2Q9BSJ2 902 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 RAB34Q9BZG1 259 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 KRT23Q9C075 422 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 REEP4Q9H6H4 257 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 THUMPD1Q9NXG2 353 aaKnown RBP1.04□□□□□ -2.24
SCN1A-208ENST00000625916 IL36GQ9NZH8 169 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 CD84Q9UIB8 345 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 TUBGCP6Q96RT7 1819 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 A0A087WZY1 265 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 IGHV5-51A0A0C4DH38 117 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 IGHV3-66A0A0C4DH42 116 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 ZNF705GA8MUZ8 300 aaPredicted RBP1.03□□□□□ -2.24
SCN1A-208ENST00000625916 INS-IGF2F8WCM5 200 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 RRP8O43159 456 aaKnown RBP1.03□□□□□ -2.24
SCN1A-208ENST00000625916 TM7SF2O76062 418 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 BGLAPP02818 100 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 CSF3P09919 207 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 GKN3PP0CG01 181 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 CD99P14209 185 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 GAP43P17677 238 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 IMPDH1P20839 514 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 PCMT1P22061 227 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 GCAP28676 217 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 GSSP48637 474 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 PDIA2Q13087 525 aaKnown RBP1.03□□□□□ -2.24
SCN1A-208ENST00000625916 SCGB2A2Q13296 93 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 FZD2Q14332 565 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 SLC15A2Q16348 729 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 ZBED5Q49AG3 693 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 TMEM41BQ5BJD5 291 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 BEND3Q5T5X7 828 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 CES3Q6UWW8 571 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 FAM92BQ6ZTR7 304 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 PGAP1Q75T13 922 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 GET4Q7L5D6 327 aaPredicted RBP1.03□□□□□ -2.24
SCN1A-208ENST00000625916 ZNF546Q86UE3 836 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 CCDC50Q8IVM0 306 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 SLC35F2Q8IXU6 374 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 ACOT4Q8N9L9 421 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 FNDC5Q8NAU1 212 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 MAIP1Q8WWC4 291 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 FAM3CQ92520 227 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 EFHD2Q96C19 240 aaPredicted RBP1.03□□□□□ -2.24
SCN1A-208ENST00000625916 PDXPQ96GD0 296 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 AURKBQ96GD4 344 aaPredicted RBP1.03□□□□□ -2.24
SCN1A-208ENST00000625916 OR2A5Q96R48 311 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 GBA3Q9H227 469 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 MEAF6Q9HAF1 191 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 ZNF355PQ9NSJ1 428 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 TMCO1Q9UM00 188 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 FANCIQ9NVI1 1328 aa1.03□□□□□ -2.24
SCN1A-208ENST00000625916 IGLV3-12A0A075B6K2 115 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 LRP5LA4QPB2 252 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 CCDC182A6NF36 153 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 F5H6K3 240 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 MAPK13O15264 365 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 RGS16O15492 202 aaPredicted RBP1.02□□□□□ -2.25
SCN1A-208ENST00000625916 TAPBPO15533 448 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 CLDN3O15551 220 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 SF3B1O75533 1304 aaKnown RBP eCLIP1.02□□□□□ -2.25
SCN1A-208ENST00000625916 NEBLO76041 1014 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 SRP72O76094 671 aaKnown RBP1.02□□□□□ -2.25
SCN1A-208ENST00000625916 MFN2O95140 757 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 MPZL1O95297 269 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 OXSR1O95747 527 aaPredicted RBP1.02□□□□□ -2.25
SCN1A-208ENST00000625916 AP2A1O95782 977 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 IGHG4P01861 327 aa1.02□□□□□ -2.25
SCN1A-208ENST00000625916 POLR2MP0CAP2 368 aa1.02□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms