RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 TSPAN19P0C672 248 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 ADORA3P0DMS8 318 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 AHCYP23526 432 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 PCYT1AP49585 367 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 ZSCAN26Q16670 478 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 EXOC3L2Q2M3D2 409 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 NHLRC1Q6VVB1 395 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 MEX3DQ86XN8 651 aaKnown RBP17.14■□□□□ 0.33
UPF1-209ENST00000600310 UEVLDQ8IX04 471 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 ZNF100Q8IYN0 542 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 APH1AQ96BI3 265 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 RAB3IPQ96QF0 476 aaPredicted RBP17.14■□□□□ 0.33
UPF1-209ENST00000600310 REEP1Q9H902 201 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 KRCC1Q9NPI7 259 aaPredicted RBP17.14■□□□□ 0.33
UPF1-209ENST00000600310 NPDC1Q9NQX5 325 aaPredicted RBP17.14■□□□□ 0.33
UPF1-209ENST00000600310 VNN3Q9NY84 501 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 SAMHD1Q9Y3Z3 626 aaKnown RBP17.14■□□□□ 0.33
UPF1-209ENST00000600310 NOX1Q9Y5S8 564 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 BLOC1S5-TXNDC5H3BN57 136 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 C19orf84I3L1E1 186 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 TRAF3IP2O43734 574 aaPredicted RBP17.13■□□□□ 0.33
UPF1-209ENST00000600310 CST1P01037 141 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 SAGP10523 405 aaPredicted RBP17.13■□□□□ 0.33
UPF1-209ENST00000600310 HLA-DOBP13765 273 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 EDNRAP25101 427 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 GRNP28799 593 aaKnown RBP17.13■□□□□ 0.33
UPF1-209ENST00000600310 GPR4P46093 362 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 SLC9A3P48764 834 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 ACTR3P61158 418 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 IL1RL1Q01638 556 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 GK3PQ14409 553 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 ANKDD1AQ495B1 522 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 BEND4Q6ZU67 534 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 AAED1Q7RTV5 226 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 ANKK1Q8NFD2 765 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 GALNT8Q9NY28 637 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 ELOVL5Q9NYP7 299 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 RCE1Q9Y256 329 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 HIF3AQ9Y2N7 669 aa17.13■□□□□ 0.33
UPF1-209ENST00000600310 LRRK2Q5S007 2527 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 C11orf98E9PRG8 122 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 CDC42EP2O14613 210 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 KLF4O43474 513 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 OR10H3O60404 316 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 CNOT4O95628 575 aaKnown RBP17.12■□□□□ 0.33
UPF1-209ENST00000600310 UQCRC1P31930 480 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 IFNGR2P38484 337 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 AQP2P41181 271 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 CLDN17P56750 224 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 RPS4XP62701 263 aaKnown RBP17.12■□□□□ 0.33
UPF1-209ENST00000600310 RPL18Q07020 188 aaKnown RBP17.12■□□□□ 0.33
UPF1-209ENST00000600310 CASP12Q6UXS9 341 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 ZER1Q7Z7L7 766 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 OAFQ86UD1 273 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 LINC00471Q8N535 108 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 FAM46AQ96IP4 442 aaKnown RBP17.12■□□□□ 0.33
UPF1-209ENST00000600310 ARMC1Q9NVT9 282 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 PRSS50Q9UI38 385 aa17.12■□□□□ 0.33
UPF1-209ENST00000600310 SPTBN1Q01082 2364 aaKnown RBP17.11■□□□□ 0.33
UPF1-209ENST00000600310 RNF13O43567 381 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 ZNF432O94892 652 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 CD79BP40259 229 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 POU3F1Q03052 451 aaPredicted RBP17.11■□□□□ 0.33
UPF1-209ENST00000600310 FHL1Q13642 323 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 KPNB1Q14974 876 aaKnown RBP17.11■□□□□ 0.33
UPF1-209ENST00000600310 LAPTM4AQ15012 233 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 FBXW9Q5XUX1 488 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 C1orf94Q6P1W5 598 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.11■□□□□ 0.33
UPF1-209ENST00000600310 GABRG1Q8N1C3 465 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 ACBD4Q8NC06 268 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 OR13C2Q8NGS9 318 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 MOSPD2Q8NHP6 518 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 TNFRSF13CQ96RJ3 184 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 DNAJB9Q9UBS3 223 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 PLEKHB1Q9UF11 243 aaPredicted RBP17.11■□□□□ 0.33
UPF1-209ENST00000600310 AP4S1Q9Y587 144 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 U3KQV3 271 aa17.11■□□□□ 0.33
UPF1-209ENST00000600310 TRAV27A0A087WT01 109 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 GNGT2O14610 69 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 AKAP8O43823 692 aaKnown RBP17.1■□□□□ 0.33
UPF1-209ENST00000600310 CCNB2O95067 398 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 POU2F1P14859 743 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 IGFBP2P18065 325 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 SELENOPP49908 381 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 FAM27E3Q08E93 113 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 PPP1R8Q12972 351 aaKnown RBP17.1■□□□□ 0.33
UPF1-209ENST00000600310 ZBED5Q49AG3 693 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 ZNF770Q6IQ21 691 aaPredicted RBP17.1■□□□□ 0.33
UPF1-209ENST00000600310 PGBD2Q6P3X8 592 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 NIPAL3Q6P499 406 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 Q6ZT83 130 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 KIF18BQ86Y91 864 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 LRRC75AQ8NAA5 344 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 OR51A7Q8NH64 312 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 TXNDC15Q96J42 360 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 GPA33Q99795 319 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 ENKD1Q9H0I2 346 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 INIPQ9NRY2 104 aa17.1■□□□□ 0.33
UPF1-209ENST00000600310 MED29Q9NX70 200 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms