RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 SNRPGP62308 76 aaKnown RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 FAM27E3Q08E93 113 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 ZNHIT3Q15649 155 aaPredicted RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 SMN1Q16637 294 aaKnown RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 ZER1Q7Z7L7 766 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 GRAMD2AQ8IUY3 354 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 ERI1Q8IV48 349 aaKnown RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 SLC2A12Q8TD20 617 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 GNPDA2Q8TDQ7 276 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 GPR151Q8TDV0 419 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 TRUB1Q8WWH5 349 aaKnown RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 ACOT11Q8WXI4 607 aaPredicted RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 PIK3R3Q92569 461 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 RIT1Q92963 219 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 UBE2FQ969M7 185 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 C12orf43Q96C57 262 aaKnown RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 INTS12Q96CB8 462 aaKnown RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 SPACA9Q96E40 222 aaPredicted RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 RBM18Q96H35 190 aaKnown RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 ZFP3Q96NJ6 502 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 MCHR1Q99705 422 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 MED18Q9BUE0 208 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 ERVK-18Q9QC07 812 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 TESQ9UGI8 421 aaKnown RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 WIF1Q9Y5W5 379 aa11.48□□□□□ -0.57
SCAF1-202ENST00000595242 CHCHD2Q9Y6H1 151 aaPredicted RBP11.48□□□□□ -0.57
SCAF1-202ENST00000595242 GXYLT2A0PJZ3 443 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 ZNF99A8MXY4 864 aaPredicted RBP11.47□□□□□ -0.57
SCAF1-202ENST00000595242 C17orf105B2RV13 164 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 NPIPB9F8W1W9 429 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 KLF4O43474 513 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 MT-ND2P03891 347 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 CLPSP04118 112 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 THY1P04216 161 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 HPNP05981 417 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 PIPP12273 146 aaPredicted RBP11.47□□□□□ -0.57
SCAF1-202ENST00000595242 POU2F1P14859 743 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 GABRA3P34903 492 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 GP2P55259 537 aaKnown RBP11.47□□□□□ -0.57
SCAF1-202ENST00000595242 PLAURQ03405 335 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 EMX1Q04741 257 aaPredicted RBP11.47□□□□□ -0.57
SCAF1-202ENST00000595242 TSPAN31Q12999 210 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 GPR68Q15743 365 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 TBCEQ15813 527 aaPredicted RBP11.47□□□□□ -0.57
SCAF1-202ENST00000595242 ZNF141Q15928 474 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 MAPK14Q16539 360 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 SLC25A30Q5SVS4 291 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 CCNJQ5T5M9 372 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 MRPL2Q5T653 305 aaKnown RBP11.47□□□□□ -0.57
SCAF1-202ENST00000595242 SYT6Q5T7P8 510 aaPredicted RBP11.47□□□□□ -0.57
SCAF1-202ENST00000595242 UBE2UQ5VVX9 321 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 LYPD8Q6UX82 237 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 HMGN2P46Q86SG4 172 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 RANBP3LQ86VV4 465 aaPredicted RBP11.47□□□□□ -0.57
SCAF1-202ENST00000595242 CLDN22Q8N7P3 220 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 ZNF615Q8N8J6 731 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 ZNF540Q8NDQ6 660 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 OR7G1Q8NGA0 311 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 OR10G3Q8NGC4 313 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 SLC22A8Q8TCC7 542 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 ZPLD1Q8TCW7 415 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 FCGR1BQ92637 280 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 SLC41A3Q96GZ6 507 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 TM9SF2Q99805 663 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 ARMC7Q9H6L4 198 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 FBXO34Q9NWN3 711 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 IMPAD1Q9NX62 359 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 CNOT2Q9NZN8 540 aaKnown RBP11.47□□□□□ -0.57
SCAF1-202ENST00000595242 AASSQ9UDR5 926 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 CDC42EP3Q9UKI2 254 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 MEGF8Q7Z7M0 2845 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 MALRD1Q5VYJ5 2156 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 ALPK2Q86TB3 2170 aa11.47□□□□□ -0.57
SCAF1-202ENST00000595242 TRAPPC13A5PLN9 417 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 CPSF4LA6NMK7 179 aaKnown RBP11.46□□□□□ -0.57
SCAF1-202ENST00000595242 PTGES3LE9PB15 166 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 H3BMQ9 156 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 KCNAB3O43448 404 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 FRS3O43559 492 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 TRIM3O75382 744 aaPredicted RBP11.46□□□□□ -0.57
SCAF1-202ENST00000595242 TRMUO75648 421 aaKnown RBP11.46□□□□□ -0.57
SCAF1-202ENST00000595242 LYPD3O95274 346 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 CDK1P06493 297 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 DRD5P21918 477 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 FPR3P25089 353 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 LOXP28300 417 aaPredicted RBP11.46□□□□□ -0.57
SCAF1-202ENST00000595242 SSTR4P31391 388 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 SLC15A1P46059 708 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 OMPP47874 163 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 IDH2P48735 452 aaKnown RBP11.46□□□□□ -0.57
SCAF1-202ENST00000595242 PSMD4P55036 377 aaKnown RBP11.46□□□□□ -0.57
SCAF1-202ENST00000595242 CDK5Q00535 292 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 SRSF2Q01130 221 aaKnown RBP11.46□□□□□ -0.57
SCAF1-202ENST00000595242 PIGFQ07326 219 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 IRF3Q14653 427 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 OCLNQ16625 522 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.46□□□□□ -0.57
SCAF1-202ENST00000595242 NPSR1Q6W5P4 371 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 RASSF6Q6ZTQ3 369 aa11.46□□□□□ -0.57
SCAF1-202ENST00000595242 MBOAT2Q6ZWT7 520 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms