RNA–Protein interactions for RNA: ENST00000590619.1

DNMT1-222, Transcript of DNA methyltransferase 1, human

TSL 1 (best)

Gene DNMT1, Length 231 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-222	ENST00000590619	FCMR	O60667	390 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	KLHL2	O95198	593 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	OTC	P00480	354 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	CSTA	P01040	98 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	IGHV1-46	P01743	117 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	HMGN2	P05204	90 aa	Known RBP	5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	UBTFL6	P0CB48	400 aa	Predicted RBP	5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	OR8G3P	P0DMU2	310 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	THRB	P10828	461 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	RYK	P34925	604 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	SPR	P35270	261 aa	Predicted RBP	5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	PGM1	P36871	562 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	HSD17B3	P37058	310 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	KLF3	P57682	345 aa	Predicted RBP	5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	FGF12	P61328	243 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	ERVS71-1	P61550	626 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	RAB1A	P62820	205 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	GUCY2D	Q02846	1103 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	PDIA2	Q13087	525 aa	Known RBP	5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	LASP1	Q14847	261 aa	Known RBP	5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	PPP1R7	Q15435	360 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	ZNF141	Q15928	474 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	GSG1	Q2KHT4	349 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	FAM83E	Q2M2I3	478 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	NSUN5P1	Q3KNT7	163 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	TMEM155	Q4W5P6	130 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	DCST2	Q5T1A1	773 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	GPR157	Q5UAW9	335 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	AP1AR	Q63HQ0	302 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	FRRS1	Q6ZNA5	592 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	GDPGP1	Q6ZNW5	385 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	MEPCE	Q7L2J0	689 aa	Known RBP	5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	SZRD1	Q7Z422	152 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	DDIAS	Q8IXT1	998 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	KDM8	Q8N371	416 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	SPIC	Q8N5J4	248 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	OR4S1	Q8NGB4	309 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	ZNF563	Q8TA94	476 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	SNX33	Q8WV41	574 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	MS4A4E	Q96PG1	132 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	SDF2	Q99470	211 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	ZNF224	Q9NZL3	707 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	TXNDC16	Q9P2K2	825 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	OSGIN1	Q9UJX0	560 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	PCDHGB4	Q9UN71	923 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	TMED7	Q9Y3B3	224 aa		5.37	□□□□□ -1.55
DNMT1-222	ENST00000590619	CENPVL3	A0A0U1RRI6	287 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	SLC22A23	A1A5C7	686 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	FAM159B	A6NKW6	160 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619		E7ESA3	106 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	NPIPB8	E9PQR5	432 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	STX16-NPEPL1	H3BU86	382 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	STX16	O14662	325 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	TM9SF1	O15321	606 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	SLC43A1	O75387	559 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	UGT2B17	O75795	530 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	TGDS	O95455	350 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	KRT6A	P02538	564 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	KRT6B	P04259	564 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	F13B	P05160	661 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	FRK	P42685	505 aa	Predicted RBP	5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	GIPR	P48546	466 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	PTDSS1	P48651	473 aa	Known RBP	5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	KRT6C	P48668	564 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	IDH2	P48735	452 aa	Known RBP	5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	HTR6	P50406	440 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	ZNF81	P51508	661 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	MMP15	P51511	669 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	AQP5	P55064	265 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	ARL4C	P56559	192 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	PCBP3	P57721	371 aa	Known RBP	5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	RAB39A	Q14964	217 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	ZMYND11	Q15326	602 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	OR7A5	Q15622	319 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	GPR68	Q15743	365 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	MAPK14	Q16539	360 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	MOG	Q16653	247 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	ZNF385B	Q569K4	471 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	ESCO2	Q56NI9	601 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	FAM209A	Q5JX71	171 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	NKAPL	Q5M9Q1	402 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	PHYHD1	Q5SRE7	291 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	ZNF774	Q6NX45	483 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	CYS1	Q717R9	158 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	OLIG3	Q7RTU3	272 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	TMEM139	Q8IV31	216 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	ZNF584	Q8IVC4	421 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	PAQR4	Q8N4S7	273 aa	Predicted RBP	5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	FGFBP3	Q8TAT2	258 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	ZNF519	Q8TB69	540 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	METTL6	Q8TCB7	284 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	MGARP	Q8TDB4	240 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	ZNF483	Q8TF39	744 aa	Predicted RBP	5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	C11orf40	Q8WZ69	217 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	DDIT4L	Q96D03	193 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	R3HDM4	Q96D70	268 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	FAM120B	Q96EK7	910 aa	Known RBP	5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	CHMP6	Q96FZ7	201 aa		5.36	□□□□□ -1.55
DNMT1-222	ENST00000590619	MAP6	Q96JE9	813 aa		5.36	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms