RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 SLC47A1Q96FL8 570 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 TRMT61AQ96FX7 289 aaKnown RBP6.87□□□□□ -1.31
SMAD4-209ENST00000589941 JSRP1Q96MG2 331 aaPredicted RBP6.87□□□□□ -1.31
SMAD4-209ENST00000589941 QRFPRQ96P65 431 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 NODALQ96S42 347 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 KAT8Q9H7Z6 458 aaKnown RBP6.87□□□□□ -1.31
SMAD4-209ENST00000589941 ACTR8Q9H981 624 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 SLC25A37Q9NYZ2 338 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 VAPAQ9P0L0 249 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 SPATA7Q9P0W8 599 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 GALPQ9UBC7 116 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 CLCF1Q9UBD9 225 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 TRMT6Q9UJA5 497 aaKnown RBP6.87□□□□□ -1.31
SMAD4-209ENST00000589941 KCNS2Q9ULS6 477 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 PPIEQ9UNP9 301 aaKnown RBP6.87□□□□□ -1.31
SMAD4-209ENST00000589941 DHRS7Q9Y394 339 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 UGT2A1Q9Y4X1 527 aa6.87□□□□□ -1.31
SMAD4-209ENST00000589941 LOC100130705A0A1B0GUX0 176 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 ELOVL7A1L3X0 281 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 TMEM89A2RUT3 159 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 ISPDA4D126 451 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 CLDN24A6NM45 220 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 SLC28A1O00337 649 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 CXCR6O00574 342 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 TRIAP1O43715 76 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 GALR3O60755 368 aaPredicted RBP6.86□□□□□ -1.31
SMAD4-209ENST00000589941 NDUFS3O75489 264 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 CRCPO75575 148 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 OTCP00480 354 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 PTNP21246 168 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 PTPN6P29350 595 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 CD40LGP29965 261 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 CLK3P49761 638 aaKnown RBP6.86□□□□□ -1.31
SMAD4-209ENST00000589941 MTPNP58546 118 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 PRDX1Q06830 199 aaKnown RBP6.86□□□□□ -1.31
SMAD4-209ENST00000589941 HIST2H2ACQ16777 129 aaPredicted RBP6.86□□□□□ -1.31
SMAD4-209ENST00000589941 TRIM16LQ309B1 348 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 DEFB134Q4QY38 66 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 EIPR1Q53HC9 387 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 OTUD3Q5T2D3 398 aaPredicted RBP6.86□□□□□ -1.31
SMAD4-209ENST00000589941 KDM4DQ6B0I6 523 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 FAM166AQ6J272 317 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 ENPP6Q6UWR7 440 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 GOLGA7Q7Z5G4 137 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 TMEM179BQ7Z7N9 219 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 IFNEQ86WN2 208 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 CLEC4FQ8N1N0 589 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 ZNF525Q8N782 197 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 SCAIQ8N9R8 606 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 ZNF740Q8NDX6 193 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 OR52B6Q8NGF0 335 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 MCOLN3Q8TDD5 553 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 SGCDQ92629 289 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 TAMM41Q96BW9 452 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 MSI2Q96DH6 328 aaKnown RBP6.86□□□□□ -1.31
SMAD4-209ENST00000589941 TM4SF19Q96DZ7 209 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 LINGO1Q96FE5 620 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 FCRL1Q96LA6 429 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 HS6ST2Q96MM7 605 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 PRAP1Q96NZ9 151 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 SEPHS2Q99611 448 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 NTMT1Q9BV86 223 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 NXF2Q9GZY0 626 aaKnown RBP6.86□□□□□ -1.31
SMAD4-209ENST00000589941 PRDM13Q9H4Q3 707 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 IKZF5Q9H5V7 419 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 SP140LQ9H930 580 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 CALHM2Q9HA72 323 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 SMURF2Q9HAU4 748 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 CCNB1IP1Q9NPC3 277 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 SERHLQ9NQF3 203 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 PNO1Q9NRX1 252 aaKnown RBP6.86□□□□□ -1.31
SMAD4-209ENST00000589941 BAG5Q9UL15 447 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 NDRG4Q9ULP0 352 aaKnown RBP6.86□□□□□ -1.31
SMAD4-209ENST00000589941 FAM32AQ9Y421 112 aaKnown RBP6.86□□□□□ -1.31
SMAD4-209ENST00000589941 SNX5Q9Y5X3 404 aa6.86□□□□□ -1.31
SMAD4-209ENST00000589941 PLCE1Q9P212 2302 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 HTR3EA5X5Y0 456 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 TMEM247A6NEH6 219 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 RGS14O43566 566 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 LCMT2O60294 686 aaKnown RBP6.85□□□□□ -1.31
SMAD4-209ENST00000589941 ZFAND5O76080 213 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 INMTO95050 263 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 RCBTB2O95199 551 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 CST1P01037 141 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 CD8AP01732 235 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 MT-ND1P03886 318 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 EEF1B2P24534 225 aaKnown RBP6.85□□□□□ -1.31
SMAD4-209ENST00000589941 FMO4P31512 558 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 TGFBR2P37173 567 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 CCR8P51685 355 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 C21orf58P58505 322 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 CSNK2BP67870 215 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 IFITM3Q01628 133 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 EMX1Q04741 257 aaPredicted RBP6.85□□□□□ -1.31
SMAD4-209ENST00000589941 GTF2H2Q13888 395 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 AP5B1Q2VPB7 878 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 PGGHGQ32M88 737 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 ADPRMQ3LIE5 342 aa6.85□□□□□ -1.31
SMAD4-209ENST00000589941 ZIK1Q3SY52 487 aaPredicted RBP6.85□□□□□ -1.31
SMAD4-209ENST00000589941 GGTA1PQ4G0N0 100 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms