RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 HSD17B12Q53GQ0 312 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 PLA1AQ53H76 456 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 NUP54Q7Z3B4 507 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 TCTE3Q8IZS6 198 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 OR4D9Q8NGE8 314 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 C1orf216Q8TAB5 229 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 LPAR4Q99677 370 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 KLHDC3Q9BQ90 382 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 LAT2Q9GZY6 243 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 ZNF700Q9H0M5 742 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 RXFP3Q9NSD7 469 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 DHCR7Q9UBM7 475 aaKnown RBP9.17□□□□□ -0.94
VPS53-220ENST00000576149 MOKQ9UQ07 419 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 USP34Q70CQ2 3546 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 ANKRD61A6NGH8 418 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 FAM171A2A8MVW0 826 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 PRR32B1ATL7 298 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 IDSB3KWA1 339 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 ZNF879B4DU55 563 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 ICOSLGO75144 302 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 UBL3O95164 117 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 YES1P07947 543 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 ARSBP15848 533 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 TACR3P29371 465 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 EFNA3P52797 238 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 TIGD3Q6B0B8 471 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 SLC16A9Q7RTY1 509 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 PRR22Q8IZ63 422 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 CARFQ8N187 725 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 ZNF511Q8NB15 262 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 OR1L3Q8NH93 324 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 ZNF563Q8TA94 476 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 HAVCR2Q8TDQ0 301 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 RNF166Q96A37 237 aaPredicted RBP9.17□□□□□ -0.94
VPS53-220ENST00000576149 KTI12Q96EK9 354 aaPredicted RBP9.17□□□□□ -0.94
VPS53-220ENST00000576149 TSSK2Q96PF2 358 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 NUDT9Q9BW91 350 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 RTN4RQ9BZR6 473 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 ABCG5Q9H222 651 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 BRD7Q9NPI1 651 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 ZNF281Q9Y2X9 895 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 AK6Q9Y3D8 172 aaKnown RBP9.17□□□□□ -0.94
VPS53-220ENST00000576149 PCDH15Q96QU1 1955 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 IGHV1OR21-1A0A087WYE8 117 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 A0A1B0GVT2 93 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 TCRBV16S1A1N1A0A5B0 115 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 PSMD9O00233 223 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 PIN1P1O15428 100 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 PIAS2O75928 621 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 F13BP05160 661 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 SFTPCP11686 197 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 SRMP19623 302 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 TCEA1P23193 301 aaKnown RBP9.16□□□□□ -0.94
VPS53-220ENST00000576149 LCN1P31025 176 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 BTCP35070 178 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 SLC6A8P48029 635 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 MMP15P51511 669 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 NANOS3P60323 173 aaKnown RBP9.16□□□□□ -0.94
VPS53-220ENST00000576149 DCAF7P61962 342 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 BTG1P62324 171 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 PITPNAQ00169 270 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 CFHR1Q03591 330 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 ZNF117Q03924 483 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 RPL18Q07020 188 aaKnown RBP9.16□□□□□ -0.94
VPS53-220ENST00000576149 UBXN2BQ14CS0 331 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 EBPQ15125 230 aaKnown RBP9.16□□□□□ -0.94
VPS53-220ENST00000576149 SLC36A2Q495M3 483 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 EMC4Q5J8M3 183 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 PRAMEF17Q5VTA0 474 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 SLC6A19Q695T7 634 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 LURAP1LQ8IV03 231 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 SLC35F3Q8IY50 421 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 YIPF7Q8N8F6 280 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 C7orf57Q8NEG2 295 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 TAAR8Q969N4 342 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 GAL3ST4Q96RP7 486 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 SMAD5Q99717 465 aaKnown RBP9.16□□□□□ -0.94
VPS53-220ENST00000576149 NOX4Q9NPH5 578 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 PAQR5Q9NXK6 330 aaPredicted RBP9.16□□□□□ -0.94
VPS53-220ENST00000576149 TEKT2Q9UIF3 430 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 SPATA2Q9UM82 520 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 CACNG2Q9Y698 323 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 GRPRP30550 384 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 ARL4DP49703 201 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 RRAS2P62070 204 aaPredicted RBP9.16□□□□□ -0.94
VPS53-220ENST00000576149 ZP2Q05996 745 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 YIF1BQ5BJH7 314 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 BICRALQ6AI39 1079 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 C1orf122Q6ZSJ8 110 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 KCTD20Q7Z5Y7 419 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 PLXDC1Q8IUK5 500 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 LIX1LQ8IVB5 337 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 C9orf40Q8IXQ3 194 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 TIGD4Q8IY51 512 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 D2HGDHQ8N465 521 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 YIPF5Q969M3 257 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 CMTM3Q96MX0 182 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 NRSN2Q9GZP1 204 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 GRHPRQ9UBQ7 328 aa9.16□□□□□ -0.94
VPS53-220ENST00000576149 ZNF346Q9UL40 294 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms