RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 C17orf105B2RV13 164 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 ZNF593O00488 134 aaPredicted RBP20.74■□□□□ 0.91
VPS53-211ENST00000571805 UBL4AP11441 157 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 SDHAP31040 664 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 UQCRC1P31930 480 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 CTXN1P60606 82 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 ALG10Q5BKT4 473 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 FCRLAQ7L513 359 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 LSM14AQ8ND56 463 aaKnown RBP20.74■□□□□ 0.91
VPS53-211ENST00000571805 ZNF431Q8TF32 576 aaPredicted RBP20.74■□□□□ 0.91
VPS53-211ENST00000571805 PTPMT1Q8WUK0 201 aaPredicted RBP20.74■□□□□ 0.91
VPS53-211ENST00000571805 GIMAP1Q8WWP7 306 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 UCKL1Q9NWZ5 548 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 SLC6A5Q9Y345 797 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 V9GY05 133 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 TMEM72A0PK05 275 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 IL33O95760 270 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 TXNDC12O95881 172 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 PROS1P07225 676 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 OR8G3PP0DMU2 310 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 ZNF782Q6ZMW2 699 aaPredicted RBP20.73■□□□□ 0.91
VPS53-211ENST00000571805 LINGO2Q7L985 606 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 KCTD20Q7Z5Y7 419 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 TIGD4Q8IY51 512 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 OR56B4Q8NH76 319 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 KLHDC3Q9BQ90 382 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 ACTR6Q9GZN1 396 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 IRF2BPLQ9H1B7 796 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 EXOSC3Q9NQT5 275 aaKnown RBP20.73■□□□□ 0.91
VPS53-211ENST00000571805 PLCL2Q9UPR0 1127 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 TP53BP1Q12888 1972 aaPredicted RBP20.73■□□□□ 0.91
VPS53-211ENST00000571805 EYSQ5T1H1 3165 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 DCTN6O00399 190 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 TMEM127O75204 238 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 F13BP05160 661 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 SULT1A3P0DMM9 295 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 SULT1A4P0DMN0 295 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 FASLGP48023 281 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 CCR4P51679 360 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 CCR9P51686 369 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 SLC37A1P57057 533 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 SERTAD2Q14140 314 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 RAB30Q15771 203 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 BEST4Q8NFU0 473 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 GCDHQ92947 438 aaPredicted RBP20.73■□□□□ 0.91
VPS53-211ENST00000571805 LPAR4Q99677 370 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 LIN7BQ9HAP6 207 aa20.73■□□□□ 0.91
VPS53-211ENST00000571805 GPR171O14626 319 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 GMDSO60547 372 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 RPP14O95059 124 aaKnown RBP20.72■□□□□ 0.91
VPS53-211ENST00000571805 TACSTD2P09758 323 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 CD1CP29017 333 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 CLDN12P56749 244 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 C19orf57Q0VDD7 668 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 LIPNQ5VXI9 398 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 Q6ZS52 159 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 OR52I2Q8NH67 350 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 ADAD1Q96M93 576 aaKnown RBP20.72■□□□□ 0.91
VPS53-211ENST00000571805 PELOQ9BRX2 385 aaKnown RBP20.72■□□□□ 0.91
VPS53-211ENST00000571805 SPRTNQ9H040 489 aaPredicted RBP20.72■□□□□ 0.91
VPS53-211ENST00000571805 SRA1Q9HD15 236 aaKnown RBP20.72■□□□□ 0.91
VPS53-211ENST00000571805 MRPL15Q9P015 296 aaKnown RBP20.72■□□□□ 0.91
VPS53-211ENST00000571805 GON4LQ3T8J9 2241 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 ZNF264O43296 627 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 ITGA10O75578 1167 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 ABHD16AO95870 558 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 HPGDP15428 266 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 PPICP45877 212 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 TMEM255AQ5JRV8 349 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 CDC20BQ86Y33 519 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 SERPINA12Q8IW75 414 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 OIT3Q8WWZ8 545 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 NXF5Q9H1B4 397 aaKnown RBP20.72■□□□□ 0.91
VPS53-211ENST00000571805 HRASLSQ9HDD0 168 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 LANCL2Q9NS86 450 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 FRRS1LQ9P0K9 344 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 OR5V1Q9UGF6 321 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 RCE1Q9Y256 329 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 RNF215Q9Y6U7 377 aa20.72■□□□□ 0.91
VPS53-211ENST00000571805 MEIKINA0A087WXM9 373 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 GABARAPH6UMI1 98 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 UTS2O95399 124 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 PTH2RP49190 550 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 ALKBH1Q13686 389 aaKnown RBP20.71■□□□□ 0.91
VPS53-211ENST00000571805 PWWP2BQ6NUJ5 590 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 STAC2Q6ZMT1 411 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 OR11G2Q8NGC1 345 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 HGDQ93099 445 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 KTI12Q96EK9 354 aaPredicted RBP20.71■□□□□ 0.91
VPS53-211ENST00000571805 C20orf85Q9H1P6 137 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 PTTG3PQ9NZH4 202 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 IGHV5-51A0A0C4DH38 117 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 H0YIG0 161 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 SCDO00767 359 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 RPL18Q07020 188 aaKnown RBP20.71■□□□□ 0.91
VPS53-211ENST00000571805 Q499Y3 187 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 FAM69AQ5T7M9 428 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 SFRP4Q6FHJ7 346 aaPredicted RBP20.71■□□□□ 0.91
VPS53-211ENST00000571805 FGD2Q7Z6J4 655 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 CLIP3Q96DZ5 547 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms