RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TRAF3IP2O43734 574 aaPredicted RBP13.18□□□□□ -0.3
VPS39-210ENST00000568357 KRT33AO76009 404 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 CH25HO95992 272 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 NQO1P15559 274 aaKnown RBP13.18□□□□□ -0.3
VPS39-210ENST00000568357 GSK3BP49841 420 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 SELENOWP63302 87 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 ADAM8P78325 824 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 SLC25A3Q00325 362 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 IL1RL1Q01638 556 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 TGFBR3Q03167 851 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 PMS2P3Q13401 168 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 PIN1Q13526 163 aaPredicted RBP13.18□□□□□ -0.3
VPS39-210ENST00000568357 ZNF74Q16587 644 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 ADAM5Q6NVV9 412 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 TTC33Q6PID6 262 aaPredicted RBP13.18□□□□□ -0.3
VPS39-210ENST00000568357 DEF8Q6ZN54 512 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 SSX8Q7RTT4 187 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 WDFY1Q8IWB7 410 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 LRRC17Q8N6Y2 441 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 C1orf162Q8NEQ5 155 aaPredicted RBP13.18□□□□□ -0.3
VPS39-210ENST00000568357 TXNDC15Q96J42 360 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 MPP4Q96JB8 637 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 CCL19Q99731 98 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 PIP5K1AQ99755 562 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 ASPNQ9BXN1 380 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 LINC00470Q9BZP3 86 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 SLC17A5Q9NRA2 495 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 RIMS3Q9UJD0 308 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 RCE1Q9Y256 329 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 FLNAP21333 2647 aaKnown RBP13.18□□□□□ -0.3
VPS39-210ENST00000568357 KIAA1324LA8MWY0 1029 aaPredicted RBP13.17□□□□□ -0.3
VPS39-210ENST00000568357 CXCR6O00574 342 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 KPNA4O00629 521 aaPredicted RBP13.17□□□□□ -0.3
VPS39-210ENST00000568357 MT-ATP6P00846 226 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 FUT4P22083 530 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 PRDX6P30041 224 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 HOXC12P31275 282 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 ZNF83P51522 516 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 TAS2R41P59536 307 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 PSME3P61289 254 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 HIKESHIQ53FT3 197 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 KRTAP1-3Q8IUG1 177 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 NKAIN4Q8IVV8 208 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 UEVLDQ8IX04 471 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 TMEM123Q8N131 208 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 ZNF611Q8N823 705 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 KBTBD8Q8NFY9 601 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 BOD1Q96IK1 185 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 ALKBH3Q96Q83 286 aaPredicted RBP13.17□□□□□ -0.3
VPS39-210ENST00000568357 OR2M2Q96R28 347 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 SMR3AQ99954 134 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 EMC6Q9BV81 110 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 ALG2Q9H553 416 aa13.17□□□□□ -0.3
VPS39-210ENST00000568357 MEPEQ9NQ76 525 aaPredicted RBP13.17□□□□□ -0.3
VPS39-210ENST00000568357 OR6C65A6NJZ3 312 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 SHISA9B4DS77 424 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 ZNF587BE7ETH6 402 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 DYNC1I1O14576 645 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 SMPD2O60906 423 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 SLC43A1O75387 559 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 OR5F1O95221 314 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 AHCYP23526 432 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 NKX6-1P78426 367 aaPredicted RBP13.16□□□□□ -0.3
VPS39-210ENST00000568357 ROR2Q01974 943 aaKnown RBP13.16□□□□□ -0.3
VPS39-210ENST00000568357 PUDPQ08623 228 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 ZNF672Q499Z4 452 aaPredicted RBP13.16□□□□□ -0.3
VPS39-210ENST00000568357 PHYHD1Q5SRE7 291 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 ABHD12BQ7Z5M8 362 aaPredicted RBP13.16□□□□□ -0.3
VPS39-210ENST00000568357 PXKQ7Z7A4 578 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 VTCN1Q7Z7D3 282 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 PRIMA1Q86XR5 153 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 C17orf78Q8N4C9 275 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 WFDC11Q8NEX6 87 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 OR1K1Q8NGR3 316 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 OR5J2Q8NH18 312 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 TMEM255BQ8WV15 326 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 BCL2L2Q92843 193 aaPredicted RBP13.16□□□□□ -0.3
VPS39-210ENST00000568357 ZNF837Q96EG3 531 aaPredicted RBP13.16□□□□□ -0.3
VPS39-210ENST00000568357 SLC19A3Q9BZV2 496 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 MED29Q9NX70 200 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 TAS2R5Q9NYW4 299 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 ABCD2Q9UBJ2 740 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 ARL2BPQ9Y2Y0 163 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 SNX13Q9Y5W8 968 aa13.16□□□□□ -0.3
VPS39-210ENST00000568357 A0A096LPE4 126 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 A0A1W2PPZ6 126 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 SLC35F4A4IF30 521 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 RPL36A-HNRNPH2H7BZ11 118 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 M0R1B8 84 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 ABCD4O14678 606 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 GSTA4O15217 222 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 SERPINI2O75830 405 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 ASAH2BP0C7U1 165 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 DANCRP0C864 163 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 ADORA3P0DMS8 318 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 NCK1P16333 377 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 PTAFRP25105 342 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 CD40P25942 277 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 YAP1P46937 504 aaKnown RBP13.15□□□□□ -0.3
VPS39-210ENST00000568357 UGT2B15P54855 530 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms